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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lssa3g03644 ATGTCTTGTGTCTGTGATTTCTGTAATCAGAGATCGGCGGTGTTGTACTGTAAAGCCGATTCGGCTAAGCTTTGTTTGTTCTGCGACAACGCCGTACACTCTGCAAATGCTTTATCTCTCAAGCACTTCCGTTCTCAGATCTGTGACAACTGCGGATCTGATGCCGTTTCCGTCGCCTGTTCAACTGATAATCTTCTCCTCTGCACCTCTTGTGATCACGATTTCCATGGAGACTCCTCCGTTTCCTCTTATCACAGTCGTGTGCCTGTTGAAGAGTTCTCCGGTTGCCCTTCCCCTCTTCAGCTGGCCTCGATTTGGGGATTTAATCTGAAATCTTCTGGTTCTAACGGCAATTCGTGTGAAAGTAAGTATTCCACTACGAATTTTCAAGATTTAGCAACGATACATGAGAAAACTCCTTGTTATGATGAGGTTCCGAGCGTTGACTGGAAATCTAGAGGTTCGGGTTGCGGAGTTCATAATAAAGTTTTGTATAAGCAGCTGGTGGAGCTTGCGAAAGAAAGATTTGACGGAGATGGAGCTGAATTGGGGCCTCAAACACCGAGTGGATGTGGTCCGAGGGATATTTCAGAAGGTTTTGAGTATGAGGAACAAGACGATAAGGATCTGTTGCATCAGCAAACTCCATTAACGTATTTGCTTATGCCGCCCCAGAATCCCGCGAATTCAAAAGCGAATAATGGGGGTATCACTGAATTTAGTAACATGTGGAGCTATAGCCCTAAACGCCAAACCAGTCAGATATGGGATTTTAATCTAGGAAGATCAAGATCTTCTGAGGCAGGAGGTGATAATCTTGGCTTTGCAATAAACAATTGTACTGACCTTGTTGAGGATGCTTCTTTCACAACAATGGAAGTTTTAAAAGAAATGGATGCCATAAACATATCTTTTGGCACCACATCACAAAATAAGCAAATATCGGGTTGCATATCAACTATGGAGAGCGACAACCGAGCTGAAACACAAATGATGGAAACCAATAGAAGTAATCCCACAATTGATGGTCAAATGATGGAACACTTTTTAGCAACCAATCAAGGAATGGAAATACCCGCAACAACCAAAGTAGACCCGCAACAACTTGCCCAAAATAGATGTAACGCAATGTTACGTTACAAGGAGAAAAAGAAAACACGAAGGTACGACAAGTGCATCCGATACGAGTCACGGAAGGCGAGAGCAGACACGAGAAAACGAGTAAAGGGAAGATTTGTGAAGAGTATTGAATGA 1254 43.22 MSCVCDFCNQRSAVLYCKADSAKLCLFCDNAVHSANALSLKHFRSQICDNCGSDAVSVACSTDNLLLCTSCDHDFHGDSSVSSYHSRVPVEEFSGCPSPLQLASIWGFNLKSSGSNGNSCESKYSTTNFQDLATIHEKTPCYDEVPSVDWKSRGSGCGVHNKVLYKQLVELAKERFDGDGAELGPQTPSGCGPRDISEGFEYEEQDDKDLLHQQTPLTYLLMPPQNPANSKANNGGITEFSNMWSYSPKRQTSQIWDFNLGRSRSSEAGGDNLGFAINNCTDLVEDASFTTMEVLKEMDAINISFGTTSQNKQISGCISTMESDNRAETQMMETNRSNPTIDGQMMEHFLATNQGMEIPATTKVDPQQLAQNRCNAMLRYKEKKKTRRYDKCIRYESRKARADTRKRVKGRFVKSIE 417
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lssa3g03644 417 SMART bboxneu5 48 90 IPR000315 GO:0008270(InterPro)
Lssa3g03644 417 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Lssa3g03644 417 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 415 - -
Lssa3g03644 417 CDD Bbox1-BBX-like 4 47 IPR049808 -
Lssa3g03644 417 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Lssa3g03644 417 ProSiteProfiles CCT domain profile. 373 415 IPR010402 GO:0005515(InterPro)
Lssa3g03644 417 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270(InterPro)
Lssa3g03644 417 Pfam CCT motif 373 414 IPR010402 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lssa3g03644 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lssa Lssa-Chr3:214099258 Lssa9g00187 Lssa-Chr9:6188856 dispersed
Lssa Lssa-Chr3:214099258 Lssa8g05064 Lssa-Chr8:269704919 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lssa9g00187 . 1 328 C2C2-CO-like Transcription Factor family AT2G47890 45.358 2.90e-96 288.0
Lssa9g03686 ACH 1 299 C2C2-CO-like Transcription Factor family AT1G78600 50.0 2.23e-91 272.0
Lssa9g03760 ACH 1 373 C2C2-CO-like Transcription Factor family AT5G48250 54.499 2.15e-130 377.0
Lssa9g00808 . 185 270 C2C2-CO-like Transcription Factor family AT2G24790 40.698 4.03e-11 60.1
Lssa9g03497 . 4 135 C2C2-CO-like Transcription Factor family AT5G54470 45.139 1.06e-31 113.0
Lssa9g02272 ACH 285 331 C2C2-CO-like Transcription Factor family AT5G57660 55.319 2.83e-10 57.4
Lssa9g02274 ACH 285 331 C2C2-CO-like Transcription Factor family AT5G57660 57.447 8.53e-11 59.3
Lssa8g02419 ACH 2 355 C2C2-CO-like Transcription Factor family AT5G57660 41.451 7.83e-81 249.0
Lssa8g04557 ACH 4 168 C2C2-CO-like Transcription Factor family AT5G54470 41.52 6.87e-26 99.0
Lssa8g04489 . 1 183 C2C2-CO-like Transcription Factor family AT4G38960 61.792 4.94e-84 245.0
Lssa8g01519 . 10 300 C2C2-CO-like Transcription Factor family AT1G68190 37.423 1.27e-63 206.0
Lssa8g00225 ACH 284 331 C2C2-CO-like Transcription Factor family AT5G57660 56.25 9.87e-11 59.7
Lssa7g03812 . 338 393 C2C2-CO-like Transcription Factor family AT5G24930 41.071 7.69e-09 53.5
Lssa7g03468 ACH 1 277 C2C2-CO-like Transcription Factor family AT1G78600 45.614 6.39e-66 205.0
Lssa7g03356 ACH 1 372 C2C2-CO-like Transcription Factor family AT3G07650 55.288 1.10e-141 406.0
Lssa7g03150 . 1 206 C2C2-CO-like Transcription Factor family AT1G75540 55.556 2.48e-66 205.0
Lssa6g02188 ACH 210 278 C2C2-CO-like Transcription Factor family AT2G24790 42.029 3.44e-11 62.0
Lssa6g00211 ACH 190 276 C2C2-CO-like Transcription Factor family AT2G24790 43.678 9.65e-12 63.2
Lssa6g02699 . 173 245 C2C2-CO-like Transcription Factor family AT3G07650 38.158 4.86e-07 44.3
Lssa6g02887 ACH 225 276 C2C2-CO-like Transcription Factor family AT2G24790 53.846 5.23e-12 63.5
Lssa5g00800 . 1 331 C2C2-CO-like Transcription Factor family AT1G75540 41.547 1.33e-74 231.0
Lssa5g00767 . 78 320 C2C2-CO-like Transcription Factor family AT3G02380 25.448 1.90e-15 73.6
Lssa5g03864 ACH 1 224 C2C2-CO-like Transcription Factor family AT1G75540 49.115 1.39e-65 206.0
Lssa5g02706 ACH 1 355 C2C2-CO-like Transcription Factor family AT5G57660 45.0 1.55e-96 290.0
Lssa5g01547 . 45 406 C2C2-CO-like Transcription Factor family AT5G24930 50.129 5.41e-97 292.0
Lssa5g02598 ACH 289 393 C2C2-CO-like Transcription Factor family AT1G68520 45.283 3.24e-18 84.0
Lssa5g03766 ACH 1 373 C2C2-CO-like Transcription Factor family AT5G48250 52.152 6.24e-131 378.0
Lssa5g03900 ACH 1 299 C2C2-CO-like Transcription Factor family AT1G78600 52.597 2.96e-90 268.0
Lssa4g05851 ACH 58 347 C2C2-CO-like Transcription Factor family AT3G02380 38.994 3.90e-58 187.0
Lssa4g02419 ACH 3 106 C2C2-CO-like Transcription Factor family AT4G27310 51.429 9.52e-31 111.0
Lssa3g01522 ACH 3 114 C2C2-CO-like Transcription Factor family AT4G27310 51.304 9.84e-33 117.0
Lssa3g03528 . 289 400 C2C2-CO-like Transcription Factor family AT1G68520 42.069 1.21e-18 84.0
Lssa3g03644 . 11 401 C2C2-CO-like Transcription Factor family AT2G33500 40.278 1.60e-82 257.0
Lssa2g02783 ACH 9 347 C2C2-CO-like Transcription Factor family AT3G02380 51.596 1.27e-120 351.0
Lssa2g04436 ACH 284 331 C2C2-CO-like Transcription Factor family AT5G57660 54.167 1.72e-10 59.3
Lssa2g01238 ACH 270 386 C2C2-CO-like Transcription Factor family AT5G24930 34.426 2.12e-11 63.2
Lssa1g01464 . 3 221 C2C2-CO-like Transcription Factor family AT3G21150 31.25 4.93e-19 80.5
Lssa1g02324 . 176 294 C2C2-CO-like Transcription Factor family AT3G07650 48.148 3.87e-26 101.0
Lssa1g02669 ACH 94 278 C2C2-CO-like Transcription Factor family AT2G24790 30.918 2.74e-14 70.9
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Lssa CCT 3.4e-15 CL0281 TF C2C2-CO-like