AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lssa3g03659 ATGTACCCACAACAACCACCGCCATCGTCTTCATCGTCCTCCTCCGATCCGGCAGCCAATTATTGGGAGACTCACGTCATGGGAACACCGGTACCCCCTTCCTCCAACCAAAACAACCCCCACGCTCCTCCCAATCCCTACGCCCAATACGGCGCCCCTCCGCCTCAACCTCCGCCCAACAATATGGATAACGTCAAGAAGAAACTTAATATGTGGGGCAACAAGGCGGAGGTCGCCGCTACCAACATCTGGAGCAATTTGAAAACGGGGCAATCTGTAACCGGATCTGCGTGGGGGAAAATGAGTTTGACAGCGAAAGCGTTAACTGAAGGTGGATTTGAATCCCTTTACAAACAGAAGTTCACGACTTACACACACGAGAAACTCAGCCGGACTTTTGCTTGTCACTTATCGACGTCCACCGGACCTGTCGCCGGAACTCTTTATCTCTCTAACATTCATGTTGCCTTCTGTAGCGATCGCCCCTTGTCTTCCATTCAACCCAACGGCATGGAGGCTTGGATCCATTACAAGGTAATAATCCCATTGGAGAAGATAGCAACAGTAAACCCAATCACAATCCCAGGCAAGAAACAAATAGACAAGTACATCCAGCTCTCTACAATCGATGGTCAAGATTTCTGGTTTATGGGTTTTGTGAATCATGACAAAGCAGCAAAACATCTTCTAGCTGGTGTCTCCACTTGTGTTAAATCAGTCCCAATTCATCAATAA 735 48.3 MYPQQPPPSSSSSSSDPAANYWETHVMGTPVPPSSNQNNPHAPPNPYAQYGAPPPQPPPNNMDNVKKKLNMWGNKAEVAATNIWSNLKTGQSVTGSAWGKMSLTAKALTEGGFESLYKQKFTTYTHEKLSRTFACHLSTSTGPVAGTLYLSNIHVAFCSDRPLSSIQPNGMEAWIHYKVIIPLEKIATVNPITIPGKKQIDKYIQLSTIDGQDFWFMGFVNHDKAAKHLLAGVSTCVKSVPIHQ 244
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lssa3g03659 244 MobiDBLite consensus disorder prediction 1 63 - -
Lssa3g03659 244 Gene3D - 113 234 IPR011993 -
Lssa3g03659 244 SMART gram2001c 115 193 IPR004182 -
Lssa3g03659 244 Pfam GRAM domain 118 228 IPR004182 -
Lssa3g03659 244 PANTHER GEM-LIKE PROTEIN 2 26 234 IPR037848 -
Lssa3g03659 244 MobiDBLite consensus disorder prediction 36 61 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lssa3g03659 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lssa Lssa-Chr3:44216477 Lssa3g03659 Lssa-Chr3:214886536 dispersed
Lssa Lssa-Chr3:214886536 Lssa7g02304 Lssa-Chr7:104475650 dispersed