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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lssa3g03662 ATGAATACCCATCTGGATATGGATATGGTGGAGGGAAACGAGGCTTGTGGTTTGAGGGCATTTGGTGGTTTTGAAATCGGACTTAGAATGGGAGTTGGAATCAATTTTGCTGGTGTTCAAGACACCACCTACAAAACTGATAATAAATCTTCTTCTTCTGCTGATGTTGTTGCTCCTGCTGCTGATCCTGTGGTTGTTGACAGAGATCTGGTGGCTGCTGCTCGTTTTGATTTACTTAAGAAGAAGCGGATGCCCAGATTCCGCCGTGGTACCTCTGCTGCTGCAGTCCGCTCCTTCACTTCCTTCCCCAGTTTTCTTCCTGCAACTATTGCTGATCATGGAAGGCTGACATTTCTGTTCAGCAAGAAGCTGCAAAAAAGTGATGTAGGTGTGCTTAAAAGGATTGTGCTTCCAAAGAAAGCAGCTGAAACACACTTACCAGCTCTAATTGCTAAGGAAGGTATCATTATGGAGATGGATGACATAGACAGCATGCATGTGTGGTGCTTCAAGTTTAGGTTCTGGCCAAATAACAACAGCCGCATGTATGTTCTTGAGGGCACTGGGGAATTTGCTGAGGAGCATGAACTGCAATTGGGTGATTACATAATGCTGTATCGGGATTCAATGAATCTCAACTATGTGATACAAGCAGTAAAAGCTTACGAAGTTGAGGAATTCACAAAGAAAGAAATGAAAACAAACCCCACTCCTCAGGTGAAATCCGTCAAAGCACCACCACCACCACCACCAGTTGACAATGGTTTAATGAACCAAAACTGGTTGTGGGGTGGCCCTGAGATGGAGGTTTTTAACCCCACAAACACAAACACAAACTACCCGATGAATATTTCAACTGTGGAAGAGCATATGGGCATGAATTTCGTATATGATACTAGCTACTCCAATGACACCATGACCCCACTTGATTTCTTGGGTGGATTCATGACAAACTACCCTGCAACTCAGCCTAGCTTTACAATCGAAAACTTGTCTATCGATGATCTTTATAAGATCTAG 1020 43.63 MNTHLDMDMVEGNEACGLRAFGGFEIGLRMGVGINFAGVQDTTYKTDNKSSSSADVVAPAADPVVVDRDLVAAARFDLLKKKRMPRFRRGTSAAAVRSFTSFPSFLPATIADHGRLTFLFSKKLQKSDVGVLKRIVLPKKAAETHLPALIAKEGIIMEMDDIDSMHVWCFKFRFWPNNNSRMYVLEGTGEFAEEHELQLGDYIMLYRDSMNLNYVIQAVKAYEVEEFTKKEMKTNPTPQVKSVKAPPPPPPVDNGLMNQNWLWGGPEMEVFNPTNTNTNYPMNISTVEEHMGMNFVYDTSYSNDTMTPLDFLGGFMTNYPATQPSFTIENLSIDDLYKI 339
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lssa3g03662 339 SMART B3-2 120 222 IPR003340 GO:0003677(InterPro)
Lssa3g03662 339 Gene3D - 109 229 IPR015300 -
Lssa3g03662 339 SUPERFAMILY DNA-binding pseudobarrel domain 118 217 IPR015300 -
Lssa3g03662 339 CDD B3-DNA 118 217 IPR003340 GO:0003677(InterPro)
Lssa3g03662 339 Pfam B3 DNA binding domain 120 219 IPR003340 GO:0003677(InterPro)
Lssa3g03662 339 ProSiteProfiles B3 DNA-binding domain profile. 120 222 IPR003340 GO:0003677(InterPro)
Lssa3g03662 339 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 98 217 IPR044800 GO:0003700(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lssa3g03662 K09287 RAV-like factor
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Event-related genes

Select Gene_1 Gene_2 Event_name
125883 Lssa2g03044 Lssa3g03662
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lssa Lssa-Chr3:215388661 Lssa9g00471 Lssa-Chr9:14117504 dispersed
Lssa Lssa-Chr3:85642446 Lssa3g03662 Lssa-Chr3:215388661 transposed
Lssa Lssa-Chr2:188433111 Lssa3g03662 Lssa-Chr3:215388661 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lssa9g00471 . 17 705 B3 DNA Binding Superfamily AT3G24650 43.586 2.39e-148 448.0
Lssa9g00174 . 55 397 B3 DNA Binding Superfamily AT5G62000 48.611 4.24e-105 336.0
Lssa9g00638 . 4 223 B3 DNA Binding Superfamily AT5G58280 50.847 8.00e-70 216.0
Lssa9g01638 . 32 459 B3 DNA Binding Superfamily AT1G19850 74.014 0.0 670.0
Lssa9g00654 ACH 1 714 B3 DNA Binding Superfamily AT4G32010 45.844 0.0 658.0
Lssa9g01386 . 1 770 B3 DNA Binding Superfamily AT4G32010 48.406 0.0 711.0
Lssa9g02636 ACH 1 575 B3 DNA Binding Superfamily AT4G30080 52.108 0.0 534.0
Lssa8g00789 ACH 1 662 B3 DNA Binding Superfamily AT4G30080 55.058 0.0 660.0
Lssa7g02518 . 1 664 B3 DNA Binding Superfamily AT1G59750 65.481 0.0 856.0
Lssa7g00732 . 3 510 B3 DNA Binding Superfamily AT4G32010 40.215 4.05e-114 359.0
Lssa7g02991 . 102 219 B3 DNA Binding Superfamily AT3G19184 39.831 3.09e-25 101.0
Lssa7g01000 . 1 477 B3 DNA Binding Superfamily AT1G30330 83.099 0.0 826.0
Lssa7g02057 ACH 1 431 B3 DNA Binding Superfamily AT1G19220 75.223 0.0 662.0
Lssa7g02992 . 108 268 B3 DNA Binding Superfamily AT3G19184 47.647 2.37e-44 154.0
Lssa7g00829 . 1 563 B3 DNA Binding Superfamily AT2G33860 47.231 4.66e-166 485.0
Lssa6g01594 ACH 62 768 B3 DNA Binding Superfamily AT5G60450 54.91 0.0 717.0
Lssa6g00323 ACH 15 583 B3 DNA Binding Superfamily AT2G46530 58.925 0.0 649.0
Lssa6g01058 . 12 662 B3 DNA Binding Superfamily AT4G30080 53.471 0.0 655.0
Lssa6g02802 ACH 13 581 B3 DNA Binding Superfamily AT2G46530 61.889 0.0 687.0
Lssa5g02490 ACH 1 473 B3 DNA Binding Superfamily AT1G19220 69.215 0.0 643.0
Lssa5g00231 . 246 387 B3 DNA Binding Superfamily AT4G32010 46.207 1.53e-36 135.0
Lssa5g05567 ACH 5 735 B3 DNA Binding Superfamily AT4G32010 44.076 0.0 616.0
Lssa5g01478 . 519 566 B3 DNA Binding Superfamily AT4G32010 45.098 2.23e-06 50.4
Lssa5g02496 . 1005 1143 B3 DNA Binding Superfamily AT5G20730 58.442 2.51e-49 175.0
Lssa5g02500 ACH 774 886 B3 DNA Binding Superfamily AT1G30330 53.913 2.04e-34 129.0
Lssa5g00341 ACH 1 850 B3 DNA Binding Superfamily AT5G62000 60.069 0.0 966.0
Lssa5g04348 . 1 476 B3 DNA Binding Superfamily AT1G19220 73.269 0.0 750.0
Lssa4g05611 . 115 236 B3 DNA Binding Superfamily AT3G19184 48.361 3.66e-38 140.0
Lssa4g04027 . 192 278 B3 DNA Binding Superfamily AT2G33860 63.218 4.28e-33 119.0
Lssa4g04181 . 438 595 B3 DNA Binding Superfamily AT4G32010 40.625 1.10e-26 103.0
Lssa4g05613 . 116 249 B3 DNA Binding Superfamily AT3G19184 45.522 8.15e-35 127.0
Lssa4g02776 . 25 124 B3 DNA Binding Superfamily AT3G18960 31.0 9.04e-09 53.9
Lssa4g01820 . 1 411 B3 DNA Binding Superfamily AT2G33860 57.746 6.94e-154 464.0
Lssa4g00367 . 10 318 B3 DNA Binding Superfamily AT5G66980 23.676 1.72e-13 70.1
Lssa4g00738 . 167 289 B3 DNA Binding Superfamily AT1G05930 32.308 2.38e-10 57.0
Lssa4g00364 . 10 306 B3 DNA Binding Superfamily AT5G66980 25.249 9.68e-20 86.3
Lssa4g05933 . 9 141 B3 DNA Binding Superfamily AT5G66980 33.083 7.91e-17 77.0
Lssa4g05612 ACH 112 250 B3 DNA Binding Superfamily AT3G19184 46.043 2.35e-37 136.0
Lssa3g00415 . 7 590 B3 DNA Binding Superfamily AT4G23980 59.936 0.0 670.0
Lssa3g02651 . 153 280 B3 DNA Binding Superfamily AT1G05930 27.273 7.32e-06 44.7
Lssa3g02374 ACH 1 794 B3 DNA Binding Superfamily AT5G37020 62.056 0.0 897.0
Lssa3g03662 ACH 45 313 B3 DNA Binding Superfamily AT3G26790 43.262 1.18e-57 187.0
Lssa3g02690 . 115 218 B3 DNA Binding Superfamily AT3G19184 43.269 3.61e-20 80.5
Lssa3g03020 ACH 112 222 B3 DNA Binding Superfamily AT3G19184 45.946 9.31e-29 112.0
Lssa3g03067 . 4 149 B3 DNA Binding Superfamily AT5G66980 34.211 1.85e-20 84.0
Lssa3g02169 . 78 178 B3 DNA Binding Superfamily AT3G26790 33.333 1.19e-11 57.8
Lssa2g02272 ACH 1 794 B3 DNA Binding Superfamily AT5G37020 63.789 0.0 963.0
Lssa2g03668 ACH 1 670 B3 DNA Binding Superfamily AT4G30080 57.061 0.0 694.0
Lssa2g03193 ACH 62 772 B3 DNA Binding Superfamily AT5G60450 53.966 0.0 742.0
Lssa2g03044 ACH 65 200 B3 DNA Binding Superfamily AT3G26790 48.936 6.85e-37 133.0
Lssa2g00473 . 4 895 B3 DNA Binding Superfamily AT1G19850 58.817 0.0 976.0
Lssa2g03167 . 2 693 B3 DNA Binding Superfamily AT2G28350 55.322 0.0 697.0
Lssa2g03408 . 444 499 B3 DNA Binding Superfamily AT4G32010 58.929 1.39e-15 77.0
Lssa1g00799 . 1 222 B3 DNA Binding Superfamily AT3G19184 55.217 1.24e-72 221.0
Lssa1g01145 ACH 1 846 B3 DNA Binding Superfamily AT5G62000 57.796 0.0 914.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Lssa B3 6.9e-14 CL0405 TF B3