AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lssa3g03684 ATGGAGTTACAAAACCAGGTGGCGCATGCGGTTCACGTCCTGAATCACGATGCTCAATCTTGCAATCGCGTCTCTGCTAATCAGTGGCTGGTTCAGTTCCAGCAGACAGATGCCGCTTGGGAGATCGCCACCTCAATTCTGACCTCTGACCATCCTAAGCCATACGTTTCCGACTTGGAAGTTGAGTTCTTCGCTGCTCAAGTTCTTAAGCGAAAGATCCAAAATGAAGGACATTGTCTACAACTGGAAGCAAAGGAATCTCTTGTTAATGCTCTCCTTCTGGCTGCTAAAAGATTTAGTTTGGGCCCTCCCCAGCTCTTAACACAAATTTGCCTGGCTCTATGCACTCTCATACTTCATGCTGTGGAATACCACAAACCAATTGAGAAGCTATTTTACAGTCTTCAGAATCTTCAAGGTCAGAATGATGGCAATATTGCTGTTTTAGAAATGCTCACAGTCTTACCTGAAGTTGTTGAAGATGAATCTGCTACTTATAAGACCAAGTCTGGTCATAGAGTTGACTATGGTCCAGAGCAGCTACTCTCACATACATCACCAGTGCTAGAGTTTCTACTCCAGCAGTCGAAGGAAAGCTTTGATGGTGTGATTCAGTTACATGACAGAAGCAGAAAGATACTGCGTTGTTTGTTAAGTTGGATTCGAGCAGGATGCTTCTCAGAAATCTTACCAGTCTCTTTACTAGCCCATCCCCTTCTTAGTTTTGTTTTCAACTCCGTGCAGGTTTTGTCCTCATTTGATTTGGCAATTGAGGTTCTCATTGAGCTCGTTAGTCGACATGAGGGACTGCCACAAGTTCTTATATTGAAGGTAGGGTTTCTTAAAGATGTTCTTCTTCGAGCTTTTAGTAGTGGAGATGAGAAAGTAATTAGTGGTCTTGCATGCTTGATGTCAGAGATTGGTCAGGCTGCTCCAAGCTTGATTATAGAAGCCAATCCCGAAGCCCTTGTCCTGGTGGATGCACTTTTGAGTTGTGTATTGTTTCCAAGTCAAGATTGGGAGATTGCAGACTCAACTTTGCAGTTTTGGTGTAGTCTTGCTAGCAATATTGTCCGAATGGAAGATGAGCTGACAGAAAATAGCAAACATGTCAAAGATGTTTTTTCTCCAGTATTTTTAGCATTGCTTGATGCTCTTCTGAGTCGTTCTCAGGTGGATGACTCAACATATGGTGATACTGCAACAAGGGAGTTGCCAGATGGGCTTGCTCAGTTTAGATTAAATTTAGTTGAGCTTTTGGTGGACATTTGCCAGCTTTTGAAGTCTGCTGTGTTTTTGCAAAAGATTTTTTTCGGTGGTTGGTTGTCTTCAAACGTGCAAATTCCATGGAAGGAGGTGGAAACCAGAATGTCTGCTCTTAATGTGGTTGCTGATGTAGTACTACAAGAAGGTCAAACATTTGATCTCTCCATGGTTTTGCACTTGGTGACAATTTTATGTGACAGGGAATCATATGAACCAAAAGGCTTTATGTGCATTGTACATAGATCACTTGTAGATGTTATTGGTTCCTATTCAAAGTGGATGTCTTCTTATGTGACTAATGCCAGGCCATTACTTTTATTTTTTGCAGCTGGTATGTCAGAACCTTTATGCTCGCATGCTTGTGCAACTGCCTTTAGAAAGTTCTGTGAAGATGCTACTGCAGTTATGCACAAACCTTCAAGTTTAGAAATGTTAATGTGGATCGGAGAGGGATTGGAAAAGAGACACTTACCTTTAGAGGACGAGGCAGATGTTATTGGTGCTGTTACTTTGATACTTGCTCACCTTCCTAACACCGACTTAAGGAACAATTTGTTGCTTAAGTTGCTTTCTCCTAGCTTTGAATCTATTGGAAAACTTATTGATGGGGATCATGTCCTCACTTTGAGGCAACTACCAGCTGCTTATACTCATCTTGTCAACTCTTCCGTGAGGGGGTTTTACAGGATAGGAACGGTGTTTGGTCATCTTGTAACACCTCTCTCTACATCTCCTGACATCGACAATTCCATAATTGCCCTTCTTGAAACCTTTTGGCCTATGCTTGAAAAATTCTTTCAGTCGGAGCACATTGAGAACACAAGCTTATCCATGGCAGCATGCAGAGCTCTCTCACAGGCAATCAAATCCGCAGGTCATCACTTTGTGACACTGTTGCCCAAAATCTTAGATTACCTATCAACAAATTTTGCATCATTTCAAACTCATGAGTGCTACATTAAAGCAGCTTGTATTGTGATTGAAGAATTTGGTAACAAGGAGGAATATGGAGCTTTATTTATGAGTACGCTTGAAAGATTTACACATGCATCATCTGTAATGGCGATAAATTCTTCTTATGTGTGCGATCAAGAGCCTGATCTTGTGGAGGCTTATTGTAGTTTCACATCAATCTTTCTTTGCACCTGTCCAAAGGAAGTAGTAGCTTCTTCTGGTCCTCTTCTTGAAGTTTCACTTCAGAAAGCAGCCATATGCTGTACAGCTATGCATCGTGGAGCAGCACTTGCAGCAATGTCATATATGTCTTGTTTTCTTGAGTTTGGGGTGACTTCATTGCTGGAATCGGTGACATCCAACTCTGCATCCATGGTGGTTCAAGTAATATCTCATAGCGGGGAAGGGATTGTATCAAATGTTGTGTATGCCTTACTTGGTGTTTCCGCAATGTCAAGGGTTCACAAATCTGCAACTATCTTGCAACAGTTGGCGGCCGTATGCAGTTTTAGTGAAAAAACAAAATGGAATTCTCTTCTCTCTTGGGATTCTTTACGTGGATGGCTACATTCTGCGGTGCGGAGTCTACCAGGTGAGTATTTAAGGCATGGGGAAGCGGAATCTTTGGCACCTGTATGGCTAAAGGCTCTGGGTGATGCAGCATTTGATTATGTGGAAAGCAGAACCAGTGATGGAGACAAGAATCATAAACATATGAGGGGAAAGGGTGGAAGATTTCTCAAGTCTTTATTTCGTGAATTTGTTGATAGTCATCGAAACATTGGAACCTGA 3012 42.0 MELQNQVAHAVHVLNHDAQSCNRVSANQWLVQFQQTDAAWEIATSILTSDHPKPYVSDLEVEFFAAQVLKRKIQNEGHCLQLEAKESLVNALLLAAKRFSLGPPQLLTQICLALCTLILHAVEYHKPIEKLFYSLQNLQGQNDGNIAVLEMLTVLPEVVEDESATYKTKSGHRVDYGPEQLLSHTSPVLEFLLQQSKESFDGVIQLHDRSRKILRCLLSWIRAGCFSEILPVSLLAHPLLSFVFNSVQVLSSFDLAIEVLIELVSRHEGLPQVLILKVGFLKDVLLRAFSSGDEKVISGLACLMSEIGQAAPSLIIEANPEALVLVDALLSCVLFPSQDWEIADSTLQFWCSLASNIVRMEDELTENSKHVKDVFSPVFLALLDALLSRSQVDDSTYGDTATRELPDGLAQFRLNLVELLVDICQLLKSAVFLQKIFFGGWLSSNVQIPWKEVETRMSALNVVADVVLQEGQTFDLSMVLHLVTILCDRESYEPKGFMCIVHRSLVDVIGSYSKWMSSYVTNARPLLLFFAAGMSEPLCSHACATAFRKFCEDATAVMHKPSSLEMLMWIGEGLEKRHLPLEDEADVIGAVTLILAHLPNTDLRNNLLLKLLSPSFESIGKLIDGDHVLTLRQLPAAYTHLVNSSVRGFYRIGTVFGHLVTPLSTSPDIDNSIIALLETFWPMLEKFFQSEHIENTSLSMAACRALSQAIKSAGHHFVTLLPKILDYLSTNFASFQTHECYIKAACIVIEEFGNKEEYGALFMSTLERFTHASSVMAINSSYVCDQEPDLVEAYCSFTSIFLCTCPKEVVASSGPLLEVSLQKAAICCTAMHRGAALAAMSYMSCFLEFGVTSLLESVTSNSASMVVQVISHSGEGIVSNVVYALLGVSAMSRVHKSATILQQLAAVCSFSEKTKWNSLLSWDSLRGWLHSAVRSLPGEYLRHGEAESLAPVWLKALGDAAFDYVESRTSDGDKNHKHMRGKGGRFLKSLFREFVDSHRNIGT 1003
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lssa3g03684 1003 SUPERFAMILY ARM repeat 1 848 IPR016024 -
Lssa3g03684 1003 Pfam Exportin 1-like protein 103 260 IPR013598 -
Lssa3g03684 1003 PANTHER TRANSPORTIN 3 AND IMPORTIN 13 5 1000 IPR051345 GO:0005737(PANTHER)|GO:0006606(PANTHER)
Lssa3g03684 1003 Gene3D - 2 951 IPR011989 -
Lssa3g03684 1003 Pfam Importin-beta N-terminal domain 26 93 IPR001494 GO:0006886(InterPro)|GO:0031267(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lssa3g03684 K15436 transportin-3