AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lssa7g02951 ATGGAGATCGCACCGGCGGTGCTAGCCGCACACGACGGAGTCGGAAACGCACCTGATTCTTCATCGGAATCTTCTGCTTCGACTGTTCCCGTTAATAACAATAATATCTCGAGCAACAGGTACGATGATGATGATGACGAAGAGGAAGATGTTTGCCGGATCTGTCGGAATTCAGGAGACGCCGACAATCCTCTCAGATATCCTTGTGCTTGTAGCGGAAGTATTAAGTTTGTTCACCAAGACTGCCTTCTCCAATGGCTCAATCACAGCAACGCTCGCCAGTGTGAGGTTTGCAAGCACCCCTTTTCATTCTCCCCTGTGTATGCCGAGAATACCCCAACAAGGCTTCCTTTTCAGGAATTTGTTATTGGAATGGCAATGAAAGCCTGTCATGTATTACAGTTCTTCCTAAGGCTCACTTTTGTGCTTTCTGTATGGCTTTTGACCATACCATTTATAACTTTCTGGATATGGCGCCTGTCATTTGTAAGAAGTTTTGGAGAAGCCCAGAGACTATTCTTGAATCATATCTCAACTACAATCATTCTCACAGACTGTCTCCATGGATTCCTACTCTCAGCCAGCATTGTGTTCATTTTTCTTGGGGCCACATCTTTGAGGGACTATTTTAGACATTTACGAGAACTTGGAGGGCAGGATGAGGATGAAGGAGATAGAAATGGTGCTCGTGTTGCTAGGAGACAACCTCCACAAGCCAACAGAAACCTTATTGGAGATGGGAATGGTGAAGATGGTGGAGGTCAAGGTATTGCTGGTGCTGGTCAGATTATCAGAAGGAATGCAGAAAATGTTGCAGCCAGGTGGGAGATGCAAGCAGCTCGTCTTGAAGCACATGTTGAACAGATGTTTGATGGTTTGGATGATGGTGATGGTGCTGAAGATGTTCCTTTTGATGAGCTTGTTGGTATGCAGGGGCCTGTTTTCCATTTGGTGGAAAATGCATTCACTGTTCTTGCAAGCAACATGATATTCCTTGGTGTCATAATTCTCATCCCCTTTCACCTAGGCCGATTGATCCTCTACATTCTATCATCTGCCACTACTCCAATGTTATCAACCGTTGTTCCCCTCACAGAACAAGCACTTTCCCTAGCCAATATCACATTAAAAAACGCACTAACTGCAGTCACAAATCTAACATCCGATCACAATGTCCTTACCCATGTCACAGAGATGTTAAATGTCAATAATGCCACTGGACTTCAAGACTCCCCAAACAATGTCACAACTCCCATTATTCTAAAAGGGGCAGTTTCAGGAGGATCAAGATTATCTGATGTCACGACTCTTGCTGTTGGCTATCTGTTCATTTTGTCCCTAATTATTTTCTACATTGGAGTTATTGCACTTATAAGGTACACTAGAGGAGAGCCTTTAACAATGGGAAGATTCTATGGTATTGCTTCGATTGCAGAAACAATCCCTTCACTTTTTAGACAGTTCTTAGCTGCAATGAGACATTTAATGACAATGATAAAAGTCGCATTCCTTTTAGTCATTGAACTTGGAGTTTTCCCTCTAATGTGTGGATGGTGGTTGGATATTTGTACCATAAGAATGTTTGGGAAGTCAATTAGTCAAAGAGTTGACTTCTTTTCGGTTTCACCACTTGCAAGTTCATTGATTCATTGGGTTGTGGGGATTGTCTACATGTTACAAATATCCATATTTGTCAGCCTTCTTCGAGGGGTTTTGCGAAATGGGGTTCTTTATTTCTTGCGAGATCCAGCTGATCCTAACTACAACCCCTTCAGGGATTTAATCGATGATCCTGTCCACAAACATGCTCGAAGGGTATTATTGTCAATTGCTGTTTACGGGAGCTTAATTGTAATGTTGGTTTTTCTACCAGTCAAACTTGCTATGCGAATGGCTCCTTCCATCTTTCCTCTTGATATATCGGTATCTGATCCATTCACTGAGATCCCTGCTGACATGCTTCTTTTCCAAATTTGTATTCCATTTGCTGTTGAGCATTTCAAGTTGCGTGCTACAATCAAATCAATTTTGCATTATTGGTTTACTGCGGTTGGTTGGGCACTTGGGTTAACAGATTACTTGTTGCCTGAACCTGAGGGCACTGAGGGGCAAAATGGGAATGATTTAGTATATGCTGAAAATCGAGCCATAGTTGGATTGCACCCTCAAGATGTGAACCGAGTTGTGGAAGAAGATGATGGTGATGAACAAGCTGATTCAGAGAGGTATACGTTTGTGTTCTGTATTGTGTTGCTTTTATTGGTGGCTTGGATGACATTGTTGGTTGTCAATTCTGCTTTGATTGTGGTGCCTGTTTCCCTTGGCCGAGTCTTGTTTAATGCAGTTCCTCTTCTTCCTATCGCACACGGCATCAAATGTAACGACATTTATGCCTTCATTATCGGAAGTTACGTGATCTGGACAGCATTGGCTGGAATCAGGTATTCCATTGATCAAATCAGAACAAGGAGAACCACAGTTCTACTAGGGCAAATCTGGAAATGGTGTTCCATTGTGGTGAAGAGCTCTGTACTTTTGTCAATTTGGATTTTTGTAATCCCAGTTTTAATTGGACTCCTGTTTGAACTTTTGGTAATTGTACCCATGAGAGTACCTGTTGATGAAAGCCCCGTGTTTTTACTATATCAAGATTGGGCTCTTGGCCTTATTTTCCTCAAGATCTGGACTCGCCTTGTAATGCTGGATCACCTGATGCCACTTATGGATGAGAGATGGAGAGTGAAATTCGAAAGGGTAAGAGAAGATGGTTTCTCAAGGCTTGAAGCGTTTTGGGTGCTAAAAGAGATAGTAATCCCCATCATGATGAAACTTCTCACAGCTCTATGTGTCCCTTATGTGTTAGCCCGAGGGGTATTTCCGGTATTTGGCTACCCGTTAGTGGTGAACTCGGCTGTGTATAGGTTCGCATGGGTGGGGTGCCTTGGGTTCAGTTTGGTGTGTTTCTGTGGGAAGAGGTTTCATGTGTGGTTTAGCAATTTGCATAATTCGATAAGAGACGATAGGTATTTGATTGGGAGAAGGCTTCATAATTTTGGGGAAGATCATAGTAAGAGTAGTGTTGATGATGTTGATGTGGATGATAATGATGATGATGATGATGATGATGATGGTGATGATGATGATGATGATGATGAGAGTTTGAATGTGTTGGTGAGAAATGATGAGGTGGGTTTGAGGCATAGACGCCATGTGGAAGTTGAGAATGTAATGTGA 3234 42.55 MEIAPAVLAAHDGVGNAPDSSSESSASTVPVNNNNISSNRYDDDDDEEEDVCRICRNSGDADNPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHPFSFSPVYAENTPTRLPFQEFVIGMAMKACHVLQFFLRLTFVLSVWLLTIPFITFWIWRLSFVRSFGEAQRLFLNHISTTIILTDCLHGFLLSASIVFIFLGATSLRDYFRHLRELGGQDEDEGDRNGARVARRQPPQANRNLIGDGNGEDGGGQGIAGAGQIIRRNAENVAARWEMQAARLEAHVEQMFDGLDDGDGAEDVPFDELVGMQGPVFHLVENAFTVLASNMIFLGVIILIPFHLGRLILYILSSATTPMLSTVVPLTEQALSLANITLKNALTAVTNLTSDHNVLTHVTEMLNVNNATGLQDSPNNVTTPIILKGAVSGGSRLSDVTTLAVGYLFILSLIIFYIGVIALIRYTRGEPLTMGRFYGIASIAETIPSLFRQFLAAMRHLMTMIKVAFLLVIELGVFPLMCGWWLDICTIRMFGKSISQRVDFFSVSPLASSLIHWVVGIVYMLQISIFVSLLRGVLRNGVLYFLRDPADPNYNPFRDLIDDPVHKHARRVLLSIAVYGSLIVMLVFLPVKLAMRMAPSIFPLDISVSDPFTEIPADMLLFQICIPFAVEHFKLRATIKSILHYWFTAVGWALGLTDYLLPEPEGTEGQNGNDLVYAENRAIVGLHPQDVNRVVEEDDGDEQADSERYTFVFCIVLLLLVAWMTLLVVNSALIVVPVSLGRVLFNAVPLLPIAHGIKCNDIYAFIIGSYVIWTALAGIRYSIDQIRTRRTTVLLGQIWKWCSIVVKSSVLLSIWIFVIPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLIFLKIWTRLVMLDHLMPLMDERWRVKFERVREDGFSRLEAFWVLKEIVIPIMMKLLTALCVPYVLARGVFPVFGYPLVVNSAVYRFAWVGCLGFSLVCFCGKRFHVWFSNLHNSIRDDRYLIGRRLHNFGEDHSKSSVDDVDVDDNDDDDDDDDGDDDDDDDESLNVLVRNDEVGLRHRRHVEVENVM 1077
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lssa7g02951 1077 CDD RING-CH-C4HC3-MARCH6 51 100 - -
Lssa7g02951 1077 ProSiteProfiles Zinc finger RING-type profile. 52 99 IPR001841 -
Lssa7g02951 1077 Pfam RING-variant domain 52 98 IPR011016 GO:0008270(InterPro)
Lssa7g02951 1077 MobiDBLite consensus disorder prediction 220 256 - -
Lssa7g02951 1077 SUPERFAMILY RING-U-box 46 103 - -
Lssa7g02951 1077 MobiDBLite consensus disorder prediction 1030 1054 - -
Lssa7g02951 1077 Gene3D Zinc-RING finger domain, C3HC4 (zinc finger) 36 110 IPR013083 -
Lssa7g02951 1077 SMART ringv-2 51 99 IPR011016 GO:0008270(InterPro)
Lssa7g02951 1077 PANTHER SSM4 PROTEIN 35 1025 - GO:0030176(PANTHER)|GO:0030433(PANTHER)
Lssa7g02951 1077 MobiDBLite consensus disorder prediction 1022 1054 - -
Lssa7g02951 1077 Coils Coil 265 285 - -
Lssa7g02951 1077 MobiDBLite consensus disorder prediction 9 45 - -
Lssa7g02951 1077 MobiDBLite consensus disorder prediction 17 38 - -
Lssa7g02951 1077 FunFam Probable E3 ubiquitin ligase SUD1 37 110 - -
Lssa7g02951 1077 ProSiteProfiles Zinc finger RING-CH-type profile. 44 105 IPR011016 GO:0008270(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lssa7g02951 K10661 E3 ubiquitin-protein ligase MARCH6 [EC:2.3.2.27]
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Event-related genes

Select Gene_1 Gene_2 Event_name
127421 Lssa5g03574 Lssa7g02951
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lssa Lssa-Chr7:156835658 Lssa8g02262 Lssa-Chr8:93653856 dispersed
Lssa Lssa-Chr5:262518040 Lssa7g02951 Lssa-Chr7:156835658 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lssa9g01905 . 38 632 HMGR gene family AT1G76490 73.179 0.0 882.0
Lssa9g02422 . 68 125 HMGR gene family AT4G34100 39.655 6.17e-10 57.4
Lssa8g05622 . 68 129 HMGR gene family AT4G34100 39.062 1.40e-09 55.8
Lssa8g04516 . 109 632 HMGR gene family AT1G76490 70.611 0.0 773.0
Lssa8g02262 . 962 1063 HMGR gene family AT4G34100 55.556 1.30e-30 119.0
Lssa8g01561 ACH 68 129 HMGR gene family AT4G34100 37.097 3.40e-09 55.5
Lssa8g01011 . 51 632 HMGR gene family AT1G76490 72.559 0.0 867.0
Lssa8g04515 . 51 632 HMGR gene family AT1G76490 66.162 0.0 807.0
Lssa7g02951 ACH 35 1107 HMGR gene family AT4G34100 72.527 0.0 1551.0
Lssa5g03574 ACH 67 1101 HMGR gene family AT4G34100 71.676 0.0 1504.0
Lssa4g05277 . 68 130 HMGR gene family AT4G34100 42.857 8.84e-12 63.2
Lssa4g00402 ACH 68 129 HMGR gene family AT4G34100 37.097 1.59e-09 56.6
Lssa4g02397 . 98 629 HMGR gene family AT1G76490 70.26 0.0 773.0
Lssa3g01981 ACH 38 132 HMGR gene family AT4G34100 34.694 1.22e-11 63.5
Lssa3g02396 ACH 51 632 HMGR gene family AT1G76490 71.98 0.0 861.0
Lssa3g01857 ACH 43 136 HMGR gene family AT4G34100 32.632 5.78e-10 57.8
Lssa2g02292 ACH 31 632 HMGR gene family AT1G76490 69.431 0.0 857.0
Lssa2g02710 . 95 230 HMGR gene family AT1G76490 42.657 1.04e-25 100.0
Lssa1g00528 ACH 68 116 HMGR gene family AT4G34100 44.898 7.89e-09 55.5