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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lssa7g02981 ATGACAAGCTCAAAACAACACCCTAAGCTTCTGTCCAAACAACTCTCATGGTCTCCGGACATCCACCGCGACATAGAATGGCAGAAGCTTAAGATCAAACAGCTACGTCGTTTCCGCCACCGCCGCTGCAAGAGCATCGACGCTACTCCTGAAGTTGACGTCACTGATGATGATTTGAAGGAGCTTAAAGCGTGCTTTGATTTAGGTTTCGGTTTTGATTTCTCTAGCGATTTGGATCCGAAACTCTCGCAAGCTTTTCCCGCTCTAGAATTGTACGCCGCCGTTAACCGGCAGTACAATCGCAGACTACTGTCAAGGTCTTCGTCGTTAAGTTCTGATTCATCTTCAACCTCATCAACCCCCATCTCCACAATTATCGATCCAAGCGATGATCCGGAAAAGATGAAGACGAAATTGAAACAGTGGGCGCAAGTGGTTTCGTGTTCTGTTCATGAAGCTTCTTCACAATCACAAATCACAACCAGTGACAAACATAATTAA 501 45.71 MTSSKQHPKLLSKQLSWSPDIHRDIEWQKLKIKQLRRFRHRRCKSIDATPEVDVTDDDLKELKACFDLGFGFDFSSDLDPKLSQAFPALELYAAVNRQYNRRLLSRSSSLSSDSSSTSSTPISTIIDPSDDPEKMKTKLKQWAQVVSCSVHEASSQSQITTSDKHN 166
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lssa7g02981 166 PANTHER OSJNBA0071G03.3 PROTEIN 7 151 - -
Lssa7g02981 166 MobiDBLite consensus disorder prediction 106 126 - -
Lssa7g02981 166 Pfam Protein of unknown function (DUF1685) 54 112 IPR012881 -
Lssa7g02981 166 MobiDBLite consensus disorder prediction 106 137 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lssa7g02981 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
128061 Lssa7g02981 Lssa9g04002
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lssa Lssa-Chr6:83357969 Lssa7g02981 Lssa-Chr7:157542550 dispersed
Lssa Lssa-Chr3:144886024 Lssa7g02981 Lssa-Chr7:157542550 wgd
Lssa Lssa-Chr7:157542550 Lssa9g04002 Lssa-Chr9:201408248 wgd