AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lssa7g03009 ATGCTACCGTCGCCGGCGGTCGATTTCAGCTGCGAAAGCACCAATACTACGCCGTACGTCACCGCACCTTCTACCCCACACCGCTTCCCCAATTTCTTCTACACCGCACCCACAAGCCCCATCCACTCCCTCGCCATCTCCTTTCATCAGGAAGATGAAAATCGTCATGATGACGATAAGGATTTTGCATTCAATTTCACCGGAGAACTGGAACCACCTTCTATATCCGCCGCCGACGAGCTCTTTCATTGCGGAAAAATCAAGCCATTAAAGCCTTCTGTCTCCGACGACCCGCCTAAATCCCCACCCTCACGCTTCACTCAAGCGTTTTCCCCTCGCCGTAAAAAGAAAGATTATGATGCTTTCACTGAGGCATTAACACAAACATCTGGTGAACAAACGCACACCAGTCAAAAACCATCTAAACGAGGAAGGGAATCGACGAGAAAAACCAAAATTAAAGACAAAGTATCACCGTCGTCATCACCGTTTAGAATCTCCGATATTTTATCCGAAGAAGAACATCACAACCAGAGAAACCCAACAAATCAATCGTCTTCGTTAACGTGGTACAATAAGTGGAACCTTAAAAACCTGCTATTGTTTCGAAGTACGTCGGAGGGAAGTGCGAGGAGGAGCAAAGACCCGGTGAATAAATATTCGAGGATAAGGAAAGACGGCGGCGACGCCGGTGAGGATGTAAGGAATTCAAGCTTTAGAAGTACAGAGAGTTTGGGTTCGAGTAGGAGGGTGATGAGGAAGGTTTCAGCGCATGAAATACATTACACGGCGAACAGAGCGGTGGCGGAAGAGATGAGGAAGAAGACGTTCTTGCCGTATAAATCTGGGTTGTTAGGTTGCTTGGGGTTCCATAACAATGGCGGAGGCAGTGTTCATGAGATTTCAAGAGGGATCACTTCTGTTATGAAGCAACGAGGATACTGA 945 47.41 MLPSPAVDFSCESTNTTPYVTAPSTPHRFPNFFYTAPTSPIHSLAISFHQEDENRHDDDKDFAFNFTGELEPPSISAADELFHCGKIKPLKPSVSDDPPKSPPSRFTQAFSPRRKKKDYDAFTEALTQTSGEQTHTSQKPSKRGRESTRKTKIKDKVSPSSSPFRISDILSEEEHHNQRNPTNQSSSLTWYNKWNLKNLLLFRSTSEGSARRSKDPVNKYSRIRKDGGDAGEDVRNSSFRSTESLGSSRRVMRKVSAHEIHYTANRAVAEEMRKKTFLPYKSGLLGCLGFHNNGGGSVHEISRGITSVMKQRGY 314
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lssa7g03009 314 MobiDBLite consensus disorder prediction 205 250 - -
Lssa7g03009 314 PANTHER OS07G0619500 PROTEIN 20 292 - -
Lssa7g03009 314 MobiDBLite consensus disorder prediction 208 233 - -
Lssa7g03009 314 Pfam Protein of unknown function (DUF1645) 78 279 IPR012442 -
Lssa7g03009 314 MobiDBLite consensus disorder prediction 123 137 - -
Lssa7g03009 314 MobiDBLite consensus disorder prediction 89 165 - -
Lssa7g03009 314 MobiDBLite consensus disorder prediction 138 156 - -
Lssa7g03009 314 MobiDBLite consensus disorder prediction 235 249 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lssa7g03009 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
127435 Lssa5g03621 Lssa7g03009
128063 Lssa7g03009 Lssa9g03986
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lssa Lssa-Chr9:222997126 Lssa7g03009 Lssa-Chr7:158829915 transposed
Lssa Lssa-Chr1:25004907 Lssa7g03009 Lssa-Chr7:158829915 wgd
Lssa Lssa-Chr5:264362177 Lssa7g03009 Lssa-Chr7:158829915 wgd
Lssa Lssa-Chr7:158829915 Lssa9g03986 Lssa-Chr9:200505095 wgd