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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lssa7g03023 ATGGGAAGCTTAAATCCATCTCCTGAAATAACCTTGGATTTCCGACCAACTTTTATCCCGAAAACAATCGGCCAGTTTCTTGGAGAAGTGTCTAGAATTAGTAACGTAACAGAGAAGCTTTTGCAAGTTGATGATTTTGTTAAACGATTAGAAACAGAAACACGGAAAATCGAAGCTTTCAAAGATCTCCCTCTATGCATGCTCCTCATGAACGATGCAATCTATGCGTTGAAGGAGGAATCAATGATGTTAAAGAAAACACCAAATTCTGAACCAGTACTCGAGGAATTTATATCACTGAAGAACAATTGTGATGATGATTCAAAACTCGAAATTATCGAAAAACAATATGAGAATAGCGATAAGAAGAATTGGTTGAGCTCGACACAGCTTTGGAACACTAATGAGAACTCCGAGGAAGAAGATGTCGGAATCAAGAATCCGATGATTCCTTGCTCTACACAAAACCTTCAATCAAACATTCGGAATGGCTGCACACCGCCTCCACCACCACCATCGCCGCCCCCACCACCACAGCAGCAGGTGGCTAGGAAACAGAGAAGATGCTGGTCAGCGGAGTTGCATAGACGATTTATTGCTGCGTTACAAGAACTTGGTGGTTCACAAGCAGCGACTCCTAAGCAGATTCGAGAGCTTATGCAAGTAGATGGCCTCACCAATGATGAAGTAAAGAGCCATTTGCAGAAATACAGGCTTCATACACGAAGGCTCCCATCTTCGTATACAAATCAACATGTAGGATTCTCTAAATGTAGCAATTCTCAATTGGATTCTCCTAATGGGCCCCTTATGAATGGTGGCGACAACATAGTCGATGATGAAGTAGAAGATGAGAAATCTCAGAATTATTGTTGGAATTAG 882 41.72 MGSLNPSPEITLDFRPTFIPKTIGQFLGEVSRISNVTEKLLQVDDFVKRLETETRKIEAFKDLPLCMLLMNDAIYALKEESMMLKKTPNSEPVLEEFISLKNNCDDDSKLEIIEKQYENSDKKNWLSSTQLWNTNENSEEEDVGIKNPMIPCSTQNLQSNIRNGCTPPPPPPSPPPPPQQQVARKQRRCWSAELHRRFIAALQELGGSQAATPKQIRELMQVDGLTNDEVKSHLQKYRLHTRRLPSSYTNQHVGFSKCSNSQLDSPNGPLMNGGDNIVDDEVEDEKSQNYCWN 293
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lssa7g03023 293 MobiDBLite consensus disorder prediction 136 187 - -
Lssa7g03023 293 SUPERFAMILY Homeodomain-like 183 243 IPR009057 -
Lssa7g03023 293 Gene3D - 184 242 - -
Lssa7g03023 293 MobiDBLite consensus disorder prediction 253 269 - -
Lssa7g03023 293 MobiDBLite consensus disorder prediction 149 163 - -
Lssa7g03023 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 184 242 IPR017930 -
Lssa7g03023 293 MobiDBLite consensus disorder prediction 253 276 - -
Lssa7g03023 293 Pfam Myb-like DNA-binding domain 187 238 IPR001005 -
Lssa7g03023 293 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 21 252 IPR044787 GO:0003700(InterPro)|GO:0006355(InterPro)
Lssa7g03023 293 NCBIfam myb-like DNA-binding domain, SHAQKYF class 185 240 IPR006447 GO:0003677(InterPro)
Lssa7g03023 293 MobiDBLite consensus disorder prediction 164 181 - -
Lssa7g03023 293 SUPERFAMILY Formin homology 2 domain (FH2 domain) 167 250 - -
Lssa7g03023 293 FunFam Myb family transcription factor 184 242 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lssa7g03023 K28176 GARP family transcription factor, NIGT1 subfamily
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Event-related genes

Select Gene_1 Gene_2 Event_name
127437 Lssa5g03631 Lssa7g03023
128064 Lssa7g03023 Lssa9g03980
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lssa Lssa-Chr4:116568439 Lssa7g03023 Lssa-Chr7:159438511 dispersed
Lssa Lssa-Chr7:159438511 Lssa8g01434 Lssa-Chr8:55293989 dispersed
Lssa Lssa-Chr5:264711233 Lssa7g03023 Lssa-Chr7:159438511 wgd
Lssa Lssa-Chr7:159438511 Lssa9g03980 Lssa-Chr9:200163612 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lssa9g01228 . 6 77 G2-like Transcription Factor family AT2G01060 68.056 3.06e-31 109.0
Lssa9g01229 . 153 199 G2-like Transcription Factor family AT5G18240 55.319 2.77e-09 52.4
Lssa9g01710 . 81 408 G2-like Transcription Factor family AT4G28610 45.402 1.66e-79 249.0
Lssa9g00428 ACH 56 355 G2-like Transcription Factor family AT4G28610 51.402 9.97e-95 289.0
Lssa9g03980 ACH 12 320 G2-like Transcription Factor family AT4G37180 37.536 2.63e-55 184.0
Lssa9g00921 . 3 270 G2-like Transcription Factor family AT3G46640 55.517 1.43e-77 252.0
Lssa9g02391 ACH 49 191 G2-like Transcription Factor family AT2G40260 59.31 2.59e-45 160.0
Lssa8g03637 . 51 172 G2-like Transcription Factor family AT2G40260 53.571 3.19e-38 139.0
Lssa8g01282 ACH 1 74 G2-like Transcription Factor family AT1G14600 74.324 1.45e-31 115.0
Lssa8g05291 . 98 214 G2-like Transcription Factor family AT2G01060 59.322 9.99e-31 112.0
Lssa8g01434 ACH 1 317 G2-like Transcription Factor family AT1G25550 42.939 5.21e-82 252.0
Lssa8g02958 . 1 335 G2-like Transcription Factor family AT3G10760 54.07 2.10e-81 247.0
Lssa8g03912 . 48 173 G2-like Transcription Factor family AT2G40260 53.125 1.03e-31 121.0
Lssa8g02649 . 1 229 G2-like Transcription Factor family AT3G46640 57.143 2.06e-77 238.0
Lssa7g00462 ACH 4 254 G2-like Transcription Factor family AT2G01060 62.934 5.25e-92 276.0
Lssa7g01544 . 1 432 G2-like Transcription Factor family AT2G03500 47.714 5.10e-123 363.0
Lssa7g02387 . 14 163 G2-like Transcription Factor family AT3G12730 71.333 3.88e-72 225.0
Lssa7g01232 . 58 120 G2-like Transcription Factor family AT2G01060 72.603 7.29e-29 102.0
Lssa7g03023 ACH 12 310 G2-like Transcription Factor family AT4G37180 37.143 4.90e-50 167.0
Lssa7g00575 . 73 138 G2-like Transcription Factor family AT2G40260 65.152 1.80e-25 102.0
Lssa6g02701 ACH 1 387 G2-like Transcription Factor family AT1G32240 43.5 1.66e-70 223.0
Lssa6g00083 ACH 211 386 G2-like Transcription Factor family AT1G32240 61.413 3.23e-61 192.0
Lssa6g03733 . 70 258 G2-like Transcription Factor family AT5G42630 39.076 1.30e-38 137.0
Lssa5g03631 ACH 6 314 G2-like Transcription Factor family AT2G03500 40.774 8.10e-58 192.0
Lssa5g05751 ACH 3 372 G2-like Transcription Factor family AT4G28610 42.118 1.37e-79 250.0
Lssa5g05186 . 183 324 G2-like Transcription Factor family AT5G06800 67.785 8.12e-63 206.0
Lssa5g05492 . 74 174 G2-like Transcription Factor family AT2G40260 63.81 3.89e-35 130.0
Lssa5g01163 . 58 120 G2-like Transcription Factor family AT2G01060 72.603 7.29e-29 102.0
Lssa5g04935 . 1 335 G2-like Transcription Factor family AT3G10760 59.412 3.72e-98 290.0
Lssa5g04740 . 6 194 G2-like Transcription Factor family AT2G01060 45.226 5.52e-51 167.0
Lssa4g00658 ACH 2 326 G2-like Transcription Factor family AT1G25550 51.389 2.17e-107 317.0
Lssa4g00407 . 24 223 G2-like Transcription Factor family AT1G69580 62.376 6.63e-77 236.0
Lssa4g01725 . 2 157 G2-like Transcription Factor family AT2G42660 41.916 6.79e-32 119.0
Lssa4g02290 . 9 416 G2-like Transcription Factor family AT2G20570 50.0 3.80e-104 313.0
Lssa4g02116 . 45 133 G2-like Transcription Factor family AT2G40260 50.562 1.35e-23 91.3
Lssa4g02476 . 82 141 G2-like Transcription Factor family AT1G25550 40.0 7.12e-06 40.4
Lssa4g00666 . 36 229 G2-like Transcription Factor family AT3G46640 45.455 1.81e-43 146.0
Lssa4g02254 ACH 5 214 G2-like Transcription Factor family AT2G01060 74.057 5.69e-97 283.0
Lssa4g00775 ACH 21 82 G2-like Transcription Factor family AT2G02060 80.645 9.58e-31 113.0
Lssa4g04247 . 2 263 G2-like Transcription Factor family AT5G42630 42.618 1.40e-55 181.0
Lssa4g05664 . 25 234 G2-like Transcription Factor family AT4G37180 24.67 2.79e-06 45.4
Lssa3g02325 . 1 403 G2-like Transcription Factor family AT5G16560 42.275 9.28e-80 251.0
Lssa3g00640 ACH 1 388 G2-like Transcription Factor family AT1G32240 49.63 1.05e-89 273.0
Lssa3g02319 . 123 207 G2-like Transcription Factor family AT2G01060 47.674 1.18e-11 58.9
Lssa3g00658 . 64 245 G2-like Transcription Factor family AT5G45580 39.572 7.95e-28 103.0
Lssa2g01599 . 66 225 G2-like Transcription Factor family AT3G46640 50.92 2.27e-44 147.0
Lssa2g02956 . 214 306 G2-like Transcription Factor family AT1G68670 63.158 6.41e-34 124.0
Lssa2g04065 ACH 49 344 G2-like Transcription Factor family AT2G40260 40.196 1.68e-47 164.0
Lssa1g02166 . 1 267 G2-like Transcription Factor family AT5G18240 61.567 5.05e-107 317.0
Lssa1g02173 . 3 401 G2-like Transcription Factor family AT5G18240 50.236 6.37e-122 356.0
Lssa1g01445 . 28 65 G2-like Transcription Factor family AT5G45580 65.789 8.95e-12 57.4
Lssa1g02555 . 1 276 G2-like Transcription Factor family AT3G24120 65.58 2.60e-122 348.0
Lssa1g02170 . 1 401 G2-like Transcription Factor family AT5G18240 49.078 8.56e-119 348.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Lssa Myb_DNA-binding 1.6e-06 CL0123 TF GARP-G2-like