AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lssa7g03057 ATGTTCTTTAGCTTCACACCTTTCAAAGGCATGAAATCAAAAATCGTTCCTTACTATATGAACGGAAATCCATCCAGTCTTTTCTGCATCTTACCACGAGACGATTCTTCACGCTTTTTTCCTCCTGGAAGCGCCCCTGTTTACCTTAATGTCTACGACATCTCCACCATTAACACTTGCATTTCATGGACAGGCCTCGGAGCCTTTCACACAGGATTAGAAGTTCATGGTGTCGAATATGGTTTTGGGTGTCATCAAGAATCAGAAAGTGGTGTTTTTGAGATTGAGCCTAAAAAATGCCCTGGATTTAAATTTAGAGAGTCGATTTTAATGGGTACTACGAAATTGAGCCCTAGTCAAGTTCAAAGATTCATTGAGCTCCAATCTAATAACTACTATGGTGACACGTATCACTTATTTGGGAAGAATTGCAATCATTTTTGTGACGATATGTGTCAAAAGTTAACCGGAAACAAAATCCCTAGGTGGGTTAACCGGCTAGCCAGATTAGGTTCATGTTGTCGTTGTATACTCCCGAAATCAATCAAGGGTTCGGCTGTGAAAAACAAATCAAACTCTTCTGATGATGATGATGAGTATGAAAAAAAGAGTTTAAGAGGTTCATTTAGTTGTTTCTCATCATTTTCAACGCATAATAAGTTGAGAAAGGTGTCAATTTCGTCATTATATAAACATTCACTCTACAAAGGATGCCTTCCACCATGGGAGTTACAAGTGGACTCACAAAGGCTTTGTGAAGAAGAAGAAGATGAAGATGAGGATGATGAGTATTGA 795 38.74 MFFSFTPFKGMKSKIVPYYMNGNPSSLFCILPRDDSSRFFPPGSAPVYLNVYDISTINTCISWTGLGAFHTGLEVHGVEYGFGCHQESESGVFEIEPKKCPGFKFRESILMGTTKLSPSQVQRFIELQSNNYYGDTYHLFGKNCNHFCDDMCQKLTGNKIPRWVNRLARLGSCCRCILPKSIKGSAVKNKSNSSDDDDEYEKKSLRGSFSCFSSFSTHNKLRKVSISSLYKHSLYKGCLPPWELQVDSQRLCEEEEDEDEDDEY 264
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lssa7g03057 264 ProSiteProfiles PPPDE domain profile. 45 182 IPR008580 GO:0008233(InterPro)
Lssa7g03057 264 Pfam PPPDE putative peptidase domain 46 180 IPR008580 GO:0008233(InterPro)
Lssa7g03057 264 Gene3D PPPDE domains 41 198 IPR042266 -
Lssa7g03057 264 PANTHER DESUMOYLATING ISOPEPTIDASE 43 206 IPR008580 GO:0008233(InterPro)|GO:0016579(PANTHER)|GO:0070646(PANTHER)|GO:0101005(PANTHER)
Lssa7g03057 264 SMART DUF862-2a 45 183 IPR008580 GO:0008233(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lssa7g03057 K22763 deubiquitinase DESI2 [EC:3.4.19.12]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lssa Lssa-Chr4:229980488 Lssa7g03057 Lssa-Chr7:161696587 dispersed
Lssa Lssa-Chr6:165889650 Lssa7g03057 Lssa-Chr7:161696587 dispersed
Lssa Lssa-Chr7:61977111 Lssa7g03057 Lssa-Chr7:161696587 dispersed
Lssa Lssa-Chr7:161696587 Lssa9g03319 Lssa-Chr9:163022388 dispersed
Lssa Lssa-Chr7:161696587 Lssa1g00723 Lssa-Chr1:22962076 transposed