AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lssa7g03060 ATGTCTAAATGCTCATTAAGGTCTTCCAATGAGCGATTGCAGTGGCTAGTTAAGAGCGAAAATCAGAAAGAGGAAGAAGGTGAAGCGCAGGCTGTGATAATTGGTGGTATGGTGTTAGACATACACGCCATTCCTTCTATTCCTCCAAACCCTAGAACCACCGTTCCTGGCAAGGTGCGATATGCAGCAGGAGGTGTAGCAAGGAACATTGCCGAATGTGTATCAAAGCTTGGAACAAAGCCTTTCATGATAAGCGCATTAGGATCGGACATCGCAGGAAATATGCTGTTAGAGTACTGGAAATCTACAGGATTATCAACAGAAGGTATTCGAATGGGCAATGAGATACAGACTCCAGTTGTATCCATTGTCTTTGATACTGAAGGAGAATCTGCAGCTGCTGTTGCAAGTGTTGAATCTCTTGAACAATTTCTTACACCCAAATGGATTCAACAATTTAAATCAAATATTTCATCTGCTCCTATTGTCATGGTTGATGCAAACTTAAGTCCATTAGCTCTTGAAGCATCTTGTCAATTGGCAGCAGAGGTGGGTACCCCAGTGTGGTTTGAGCCTGTATCTGTAGCCAAGTCAAGAAGAATTGTTTCAGTTGCCAAGTATATAACCTTCACTTCACCTAATGAAGATGAATTAATTGCTATGGCAAATGCTCTATCTCCCAAACACACCTTCTCCCCAATTCAAAAAGAAGCCTCCACAATAACCTCTCTATTCCAACAACTAAAACCAGCAATCTCAATTTTGTTAGAAAAAGGCATCAAAGTAGTCATTCTAACCCTTGGATCAAAAGGCGTATTATTATGTTCCAAAAAACACTTCAATTTCCTTCATTCTATTTGCCCAAAAAGAAACAACAATAACAAAAGGTTGCAAGAAGCTATAAATCTAGTCTGCCCGGTGGGCCGGTTTTCCGGCGGTGGTGGTGGAGGTGTGGTCCATTTTCCGGCGGTGTCATTGGCGGCAGTTGTGAGGTTGACCGGAGCTGGGGATTGTTTGGTGGGTGGTGTGGTGGCGTCTGTTTGTGGTGGTTTGGATTTAATGCAAAGTGTTGCAGTTGGAATTGCAACTGCTAAAGCTGCTGTTGAAGTGGAGACCAATGTGCCTCTTCAATTTGATTTCGACCATATTGCAGAGGATGCAAGATCGGTGTACTTGGGTGCAAAGGTTGTTTTTTCTCAGTCTATGTTGTAA 1212 42.66 MSKCSLRSSNERLQWLVKSENQKEEEGEAQAVIIGGMVLDIHAIPSIPPNPRTTVPGKVRYAAGGVARNIAECVSKLGTKPFMISALGSDIAGNMLLEYWKSTGLSTEGIRMGNEIQTPVVSIVFDTEGESAAAVASVESLEQFLTPKWIQQFKSNISSAPIVMVDANLSPLALEASCQLAAEVGTPVWFEPVSVAKSRRIVSVAKYITFTSPNEDELIAMANALSPKHTFSPIQKEASTITSLFQQLKPAISILLEKGIKVVILTLGSKGVLLCSKKHFNFLHSICPKRNNNNKRLQEAINLVCPVGRFSGGGGGGVVHFPAVSLAAVVRLTGAGDCLVGGVVASVCGGLDLMQSVAVGIATAKAAVEVETNVPLQFDFDHIAEDARSVYLGAKVVFSQSML 403
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lssa7g03060 403 PANTHER ZGC:136858 26 379 - -
Lssa7g03060 403 Gene3D - 26 391 IPR029056 -
Lssa7g03060 403 ProSitePatterns pfkB family of carbohydrate kinases signature 1. 64 88 IPR002173 GO:0016301(InterPro)
Lssa7g03060 403 CDD YeiC-kinase-like 32 369 - -
Lssa7g03060 403 Pfam pfkB family carbohydrate kinase 31 290 IPR011611 -
Lssa7g03060 403 PRINTS Ribokinase signature 33 54 IPR002139 GO:0016301(InterPro)
Lssa7g03060 403 PRINTS Ribokinase signature 203 218 IPR002139 GO:0016301(InterPro)
Lssa7g03060 403 PRINTS Ribokinase signature 263 274 IPR002139 GO:0016301(InterPro)
Lssa7g03060 403 SUPERFAMILY Ribokinase-like 31 371 IPR029056 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lssa7g03060 - -