AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lssa7g03062 ATGATACAAATTTCAATATTTCTGGTAAAAGCCAACCTATCTATAACTTCCATACTTCTCTTTCACTTTTCATCTCAAAAACCAGCCATGGCTTCTTCTTCAAGTTGCAGTCTTCTCTTCCATGTTCTATTGCTCATACAGTTTTGCAGCTCTCGAGATATCATCGACAAAAACCTGAAGAACGACAATCATAACGAAGAAAATCATATAAAAATTTATGGGAAAAATGAAGCCGATGATTTCGATCCTGCTTTAAAAGTGTTCTTCAACGTAAATGATTTATACAAGGGCAAAAAAATGCCGATTTATTTCGCAACAAGCGATCCTTCCACAACTCCTCGACTACTCACTAGAGAACAAGCCGATTCAATACCATTCTCCTCGTCAAAACTCCGTTATCTTCTTGACTTTTTAACGTTGACCAACGACTCACCACAAGCAAAAGCCATGGAACAAACGCTCAAACAATGTGAACTTGATCCGACACCCGGTGAGACAAGATTCTGTGCAACCTCGTTGGAATCGATGCTGGACATGACACGTGGCGTATTGGGTATGGTGAAACTGAAGGTGTTGACCACCAAGATCCATAATTTGACAGATTCCGGTTATACACTTTTGCAAGAGTACACGTTTCTGAAGGAGCCATCGGAGATTCATGTTCCTGATATGGTGGCTTGTCATACCATGGCTTATCCTTATGCGGTTTACTATTGCCATGCTCAGAAGGGGAATAATAGGGCATTTGAGATTTCTTTAGGGGGTAAAAATGGAAATAGAATTGATGCTATTGCTGTGTGCCACATGGACACTTCCAAGTGGGACACTGACCACGTGGCGTTTCGTGTACTCGGAGTCCAGCCTGGCAGCTCGCCTGTTTGTCATTTTCTTCCGGCCGATAACATCATGTGGATCCCATCGGTTTAG 927 42.07 MIQISIFLVKANLSITSILLFHFSSQKPAMASSSSCSLLFHVLLLIQFCSSRDIIDKNLKNDNHNEENHIKIYGKNEADDFDPALKVFFNVNDLYKGKKMPIYFATSDPSTTPRLLTREQADSIPFSSSKLRYLLDFLTLTNDSPQAKAMEQTLKQCELDPTPGETRFCATSLESMLDMTRGVLGMVKLKVLTTKIHNLTDSGYTLLQEYTFLKEPSEIHVPDMVACHTMAYPYAVYYCHAQKGNNRAFEISLGGKNGNRIDAIAVCHMDTSKWDTDHVAFRVLGVQPGSSPVCHFLPADNIMWIPSV 308
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lssa7g03062 308 PANTHER BURP DOMAIN PROTEIN USPL1-LIKE 66 307 IPR044816 -
Lssa7g03062 308 SMART BURP-2 86 307 IPR004873 -
Lssa7g03062 308 ProSiteProfiles BURP domain profile. 88 307 IPR004873 -
Lssa7g03062 308 Pfam BURP domain 87 305 IPR004873 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lssa7g03062 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
128067 Lssa7g03062 Lssa9g03953
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lssa Lssa-Chr1:75476837 Lssa7g03062 Lssa-Chr7:161887429 transposed
Lssa Lssa-Chr6:16738959 Lssa7g03062 Lssa-Chr7:161887429 transposed
Lssa Lssa-Chr9:161857289 Lssa7g03062 Lssa-Chr7:161887429 transposed
Lssa Lssa-Chr7:161887429 Lssa9g03953 Lssa-Chr9:199635868 wgd