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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lssa7g03087 ATGGCCGCCATCTTAGCTCGCAAGTCGATCTCCGCTATCCGTAATCGACAGCTTATTGTCACAGGACAAGCATTGCATGCCCATAACACTGGAACAATTTCTGGCGCACGCTCATTTGCAACCAAACACTCATTTTCAACTGATAAAGATGATGAAGAAAGAGAAAAGCTTGCAAGAGAAATATCAAAAGACTGGAGTTCTGTGTTTGAAAGGAGCATTAATACGTTGTTTCTAACTGAATTGGTTCGAGGTCTCTCTCTGACACTCAAATACTTCTTTGAGCCAAAAGTTACTATCAATTATCCATTTGAGAAAGGTCCATTAAGCCCTCGTTTTCGAGGAGAACATGCCCTCAGACGTTATCCAACAGGAGAGGAGCGTTGTATTGCTTGTAAACTTTGTGAAGCTATATGCCCTGCTCAAGCTATCACCATAGAAGCAGAGGAACGAGAAGATGGAAGCCGCAGAACAACAAGGTATGATATTGATATGACAAAATGTATATACTGTGGATTCTGCCAAGAAGCATGTCCTGTTGATGCGATTGTAGAGGGGCCCAACTTTGAGTTTGCTACAGAAACACATGAGGAACTTTTGTATGATAAGGAGAAGCTTCTAGAAAATGGGGATAGATGGGAAACTGAGATTGCTGAGAATCTTAGATCCGAGAGCCTTTATCGGTAA 684 41.96 MAAILARKSISAIRNRQLIVTGQALHAHNTGTISGARSFATKHSFSTDKDDEEREKLAREISKDWSSVFERSINTLFLTELVRGLSLTLKYFFEPKVTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFATETHEELLYDKEKLLENGDRWETEIAENLRSESLYR 227
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lssa7g03087 227 NCBIfam NADH-quinone oxidoreductase, chain I 84 205 IPR010226 GO:0016020(InterPro)|GO:0016651(InterPro)|GO:0051539(InterPro)
Lssa7g03087 227 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 119 148 IPR017896 -
Lssa7g03087 227 PANTHER NADH DEHYDROGENASE UBIQUINONE IRON-SULFUR PROTEIN 8, MITOCHONDRIAL 60 227 IPR010226 GO:0003954(PANTHER)|GO:0005747(PANTHER)|GO:0006120(PANTHER)|GO:0009060(PANTHER)|GO:0016020(InterPro)|GO:0016651(InterPro)|GO:0032981(PANTHER)|GO:0045272(PANTHER)|GO:0051539(InterPro)
Lssa7g03087 227 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 128 139 IPR017900 -
Lssa7g03087 227 SUPERFAMILY 4Fe-4S ferredoxins 101 211 - -
Lssa7g03087 227 Pfam 4Fe-4S dicluster domain 127 181 IPR017896 -
Lssa7g03087 227 Hamap NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. 75 211 IPR010226 GO:0016020(InterPro)|GO:0016651(InterPro)|GO:0051539(InterPro)
Lssa7g03087 227 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 158 187 IPR017896 -
Lssa7g03087 227 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 167 178 IPR017900 -
Lssa7g03087 227 Gene3D - 101 226 - -
Lssa7g03087 227 FunFam NADH-quinone oxidoreductase subunit I 1 101 224 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lssa7g03087 K03941 NADH dehydrogenase (ubiquinone) Fe-S protein 8 [EC:7.1.1.2]
Lssa7g03087 K00338 NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
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Event-related genes

Select Gene_1 Gene_2 Event_name
128068 Lssa7g03087 Lssa9g03947
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lssa Lssa-Chr3:308057165 Lssa7g03087 Lssa-Chr7:163606077 transposed
Lssa Lssa-Chr4:320611545 Lssa7g03087 Lssa-Chr7:163606077 transposed
Lssa Lssa-Chr4:297174657 Lssa7g03087 Lssa-Chr7:163606077 transposed
Lssa Lssa-Chr5:145448282 Lssa7g03087 Lssa-Chr7:163606077 transposed
Lssa Lssa-Chr7:163606077 Lssa9g03947 Lssa-Chr9:199447841 wgd