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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lssa7g03125 ATGGCGGCGGCGGCCTCTTCTTCCCACCTTCAATTTCAATCGCTCTCTTTCGCCAAAACCCTAAATCAATCTTCAAAGCCGATCACTCCCAAAACCTTAATTTCTTATAAACCCGCTTCCAAAACACTCGCTATCCGAGCTGTCATATCACAAAAACCTCCAGCAACTCAGAAATTTCAACATTGCTTCACCAAGAAAGACGATGGCTATTTGTACTGTGAGGGTCTTAAAGTTCAAGAAGTCATGGAGGCCGTTGAAAGAAGGCCCTTTTATCTCTACAGTAAACCTCAGATAACTAGAAACGTCGAGGCTTATAAGGAAGCTTTGGAGGGACTGAATTCGATTATCGGATATGCAATTAAAGCCAATAACAACTTCTTGATTTTACAACATTTGAAGAATTTGGGTTGTGGGGCTGTTTTGGTTAGTGGAAATGAGCTCCGATTGGCCATTCGTGCTGGTTTTGATCCTACCAGATGCATTTTTAATGGAAACGGGAAGCTTTTGGATGATCTTGTTCTTGCTGCTCAAGAAGGCGTATTTGTCAACATTGACAGTGAATTCGATTTGGATAACATTGTATCTGCTGCAAGAATCGCAGGGAAGAAGGTTAATGTATTGCTTAGAATCAATCCGGATGTCGACCCTCAGGTCCATCCTTATGTTGCAACTGGAAACAAAAACTCCAAATTCGGTATAAGAAACGAGAAATTGCAATGGTTTCTAGATGCTGTGAAGTCATACCCCGATGAACTTAAACTAGTTGGCGCCCATTGCCATCTTGGATCCACCATCACCAAGGTTGACATTTTCAGAGATGCTGCATCAATCATGGTGAAGTTTATAGACGAAATTCGAGCTCAAGGATTTGATATTAATTATTTAAATATTGGAGGTGGTCTTGGGATTGATTATTATCATACTGGTACTGTTCTTCCTACACCCAGGGATCTCATCGACACAGTTAGGGAGTTGGTTTTGTCGCGAAATCTTAATCTGATAATTGAACCTGGGAGATCGCTAATTGCAAATACTTGTTGTCTTGTGAATCGTGTCACGGGTGTGAAAACAAATGGCACGAAGAACTTTATTGTGATTGATGGAAGCATGGCTGAACTTATTCGCCCTAGTCTATATGATGCTTATCAACACATAGAATTGGTTTCACCTCCACCACATGATTCTGCGGTTTCAACTTTTGATGTGGTGGGCCCCGTTTGCGAGTCGGCCGATTTCTTGGGGAAGGACAGGGACCTTCCTTCTCCTGCCAGTGGTTCTGGGCTTGTAGTTCATGATGCAGGTGCATACTGCATGAGCATGGCTTCAACTTACAATCTCAAGATGCGTCCACCTGAGTATTGGGTTGATGAAGATGGATCTGTAGCGAAAATTAGGCATGGGGAGACTTTTGAAGATCATATGAGATACTTTGAGGGACTCTAG 1443 42.48 MAAAASSSHLQFQSLSFAKTLNQSSKPITPKTLISYKPASKTLAIRAVISQKPPATQKFQHCFTKKDDGYLYCEGLKVQEVMEAVERRPFYLYSKPQITRNVEAYKEALEGLNSIIGYAIKANNNFLILQHLKNLGCGAVLVSGNELRLAIRAGFDPTRCIFNGNGKLLDDLVLAAQEGVFVNIDSEFDLDNIVSAARIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKSYPDELKLVGAHCHLGSTITKVDIFRDAASIMVKFIDEIRAQGFDINYLNIGGGLGIDYYHTGTVLPTPRDLIDTVRELVLSRNLNLIIEPGRSLIANTCCLVNRVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPPPHDSAVSTFDVVGPVCESADFLGKDRDLPSPASGSGLVVHDAGAYCMSMASTYNLKMRPPEYWVDEDGSVAKIRHGETFEDHMRYFEGL 480
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lssa7g03125 480 Gene3D Alanine racemase 95 340 IPR029066 -
Lssa7g03125 480 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 138 150 IPR000183 GO:0003824(InterPro)
Lssa7g03125 480 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 434 447 IPR000183 GO:0003824(InterPro)
Lssa7g03125 480 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 251 264 IPR000183 GO:0003824(InterPro)
Lssa7g03125 480 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 118 136 IPR000183 GO:0003824(InterPro)
Lssa7g03125 480 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 333 352 IPR000183 GO:0003824(InterPro)
Lssa7g03125 480 Hamap Diaminopimelate decarboxylase [lysA]. 75 478 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Lssa7g03125 480 SUPERFAMILY PLP-binding barrel 88 344 IPR029066 -
Lssa7g03125 480 PRINTS Diaminopimelate decarboxylase signature 361 379 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Lssa7g03125 480 PRINTS Diaminopimelate decarboxylase signature 136 153 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Lssa7g03125 480 PRINTS Diaminopimelate decarboxylase signature 224 233 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Lssa7g03125 480 PRINTS Diaminopimelate decarboxylase signature 444 466 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Lssa7g03125 480 CDD PLPDE-III-DapDC 89 455 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Lssa7g03125 480 PANTHER DIAMINOPIMELATE DECARBOXYLASE 55 476 - GO:0008836(PANTHER)|GO:0009089(PANTHER)|GO:0009507(PANTHER)
Lssa7g03125 480 SUPERFAMILY Alanine racemase C-terminal domain-like 318 475 IPR009006 GO:0003824(InterPro)
Lssa7g03125 480 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 78 474 IPR009006 GO:0003824(InterPro)
Lssa7g03125 480 FunFam Diaminopimelate decarboxylase 331 474 - -
Lssa7g03125 480 ProSitePatterns Orn-DAP-Arg decarboxylases family 2 pyridoxal-P attachment site. 118 136 IPR022653 -
Lssa7g03125 480 Pfam Pyridoxal-dependent decarboxylase, C-terminal sheet domain 344 434 IPR022643 GO:0003824(InterPro)
Lssa7g03125 480 ProSitePatterns Orn-DAP-Arg decarboxylases family 2 signature 2. 287 302 IPR022657 -
Lssa7g03125 480 FunFam Diaminopimelate decarboxylase 95 340 - -
Lssa7g03125 480 NCBIfam diaminopimelate decarboxylase 65 475 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Lssa7g03125 480 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 97 343 IPR022644 GO:0003824(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lssa7g03125 K01586 diaminopimelate decarboxylase [EC:4.1.1.20]