AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lssa7g03141 ATGCATCAGTCCATGGCCAAAGTCCGCGGCAACGAAAAAACCCTAGATTCTTACACCGTCAAAGCCATTAACGAATCCATAAGACCCGGCGATTGCGTGTTCATGCGATCTCCCAATCCTTCGAAGCCACCGTACATAGCAAAAGTGGATAAGATCGTATCCGACGACAACGGAAGCAACGTGAAAGTTCACATCCGGTGGTACTACCGGCCGGAGGAATCAAAAGACGGCAAACAACCATTTCACGGAAGCACAGAAGTATTCATTTCCGATCACCGTGATGTTCAAAGCCCTGATACAATCGAAGGCAAGTGTAAGGTTCACACTTTCAAGAGCTATACATCACTCGATGACATTGGCAACGACGATTTCTTCTGTCGTTTTGAGTATCATTCTTCCACCGGAGACTTCACTCCCAATAGCGTAGCAGTGTACTGCACGTGTGAAATGCCTTACAATCCTGATCAGTTCATGATCCAGTGTGATGGCTGCACTGATTGGTTTCATCCTGATTGTTTAAAGATGACAGTGGATGAGGCTAAAACAATTGAACACTTATTTTGTCGAAGCTGTTCATCTGAAGAACAAAGGATTCTCCAAAACCCTCGTGCTAATTCCAGGAATTCAACCATGAAGGTGGAGACAAAACGTCGTCGAAGGTAA 663 45.25 MHQSMAKVRGNEKTLDSYTVKAINESIRPGDCVFMRSPNPSKPPYIAKVDKIVSDDNGSNVKVHIRWYYRPEESKDGKQPFHGSTEVFISDHRDVQSPDTIEGKCKVHTFKSYTSLDDIGNDDFFCRFEYHSSTGDFTPNSVAVYCTCEMPYNPDQFMIQCDGCTDWFHPDCLKMTVDEAKTIEHLFCRSCSSEEQRILQNPRANSRNSTMKVETKRRRR 220
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lssa7g03141 220 ProSitePatterns Zinc finger PHD-type signature. 146 191 IPR019786 -
Lssa7g03141 220 ProSiteProfiles Zinc finger PHD-type profile. 143 194 IPR019787 -
Lssa7g03141 220 Pfam PHD-finger 146 191 IPR019787 -
Lssa7g03141 220 SUPERFAMILY FYVE-PHD zinc finger 133 195 IPR011011 -
Lssa7g03141 220 Pfam BAH domain 26 139 IPR001025 GO:0003682(InterPro)
Lssa7g03141 220 Gene3D - 1 140 IPR043151 -
Lssa7g03141 220 ProSiteProfiles BAH domain profile. 25 141 IPR001025 GO:0003682(InterPro)
Lssa7g03141 220 PANTHER OS08G0421900 PROTEIN 3 212 - -
Lssa7g03141 220 MobiDBLite consensus disorder prediction 199 220 - -
Lssa7g03141 220 Gene3D Zinc-RING finger domain, C3HC4 (zinc finger) 141 207 IPR013083 -
Lssa7g03141 220 SMART PHD-3 145 192 IPR001965 -
Lssa7g03141 220 SMART BAH-4 25 141 IPR001025 GO:0003682(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lssa7g03141 K25868 chromatin remodeling protein
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
127468 Lssa5g03716 Lssa7g03141
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lssa Lssa-Chr7:166334538 Lssa9g03861 Lssa-Chr9:194825447 dispersed
Lssa Lssa-Chr5:269683706 Lssa7g03141 Lssa-Chr7:166334538 wgd
leaf

Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lssa9g01226 . 1 240 Alfin-like Transcription Factor family AT5G05610 76.033 1.02e-120 342.0
Lssa9g02285 . 202 260 Alfin-like Transcription Factor family AT5G20510 81.356 2.22e-33 116.0
Lssa9g02420 ACH 1 240 Alfin-like Transcription Factor family AT5G05610 79.583 1.75e-128 361.0
Lssa9g03043 . 1 120 Alfin-like Transcription Factor family AT2G02470 81.667 8.07e-56 172.0
Lssa7g01322 ACH 3 260 Alfin-like Transcription Factor family AT5G20510 72.868 8.46e-125 353.0
Lssa7g03141 ACH 201 255 Alfin-like Transcription Factor family AT2G02470 41.818 2.61e-08 51.2
Lssa5g04414 ACH 1 260 Alfin-like Transcription Factor family AT5G20510 71.863 3.42e-120 342.0
Lssa5g04736 . 114 240 Alfin-like Transcription Factor family AT5G05610 58.696 2.52e-52 164.0
Lssa5g02455 . 4 260 Alfin-like Transcription Factor family AT5G20510 65.157 1.62e-119 341.0
Lssa4g03283 ACH 1 260 Alfin-like Transcription Factor family AT5G20510 68.817 7.22e-126 357.0
Lssa2g04029 ACH 1 238 Alfin-like Transcription Factor family AT5G05610 75.833 9.23e-119 337.0
Lssa1g00263 . 1 30 Alfin-like Transcription Factor family AT5G05610 66.667 1.63e-06 43.9
leaf

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Lssa BAH 1.3e-20 No_clan TR PHD