Gene detail

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Gene ID

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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lssa7g03146	ATGGATCACCGGCTCTTTCTCCTCCTCTCCTGTTCTCTTCTCGCCGTTGCCTCTTTGGTCGCCGGAGACGACGCCTTCATCCGTCAGGTGGTCGACGACCGAGTCCAGTCGTTGAACACGGAGGAGCATCTGCATCACTTCGGTGTCTTCAGGCGAAAATTCGGTAAATCATACGCGTCACAGGAAGAACATGATTACAGGTTCACTGTCTTCAAAACTAACCTCCGCCGCGCAAAGCGTCACCAGAAGCTTGATCCATCGGCGGTCCATGGCATCACTCAATTCTCCGACATGACTCCATCGGAATTCCGAAAGCATCTCGGACTGAGATCTCGTCTCAGGTTCCCGGCGGACGCCAGCGAGGCTCCGATCCTTCCGACAAACGATCTTCCCGATGATTTCGATTGGAGAGATCATGGTGCAGTCACCAATGTGAAGAATCAGGGTTCGTGTGGGTCATGCTGGTCGTTTAGTACAACTGGAGCACTCGAAGGTGCTAATTTCCTTGCTACAGGGAAGCTTGAAAGCCTTAGTGAACAGCAACTTGTTGATTGTGACCATGAGTGTGATCCAGAAGAAAAGGATTCATGTGATTCAGGATGTGACGGAGGTCTGATGAACAGTGCTTTTGAGTACACTTTGAAAGCTGGTGGGCTTATGAGGGAAGAAGACTATCCTTACACAGGGAGCGATGGTGGAAGATGTAAATTTGATAAAAACAAGATTGTAGCATCTGTGAGTAATTTCAGTGTGGTGTCCCTTGATGAAGATCAGATTGCTGCTAATCTTGTGAAACATGGTCCTCTTGCTGTGGCTATCAATGCGGTTTATATGCAGACATATATTGGGGGAGTGTCATGCCCATATGTATGCTCAAAAAGGCTAGACCATGGTGTACTAATGGTTGGTTATGGTGCTTCTGGATACTCCCCAATAAGAAGGAAGGAAAAACCATACTGGATCATTAAGAACTCATGGGGACCAAATTGGGGAGAAAACGGATATTACAAAATCTGTAAAGGTCCTAATGTTTGTGGTGTTGATTCCATGGTCTCCACAGTCGTTGCAGTTGCCCAACACTAA	1083	47.46	MDHRLFLLLSCSLLAVASLVAGDDAFIRQVVDDRVQSLNTEEHLHHFGVFRRKFGKSYASQEEHDYRFTVFKTNLRRAKRHQKLDPSAVHGITQFSDMTPSEFRKHLGLRSRLRFPADASEAPILPTNDLPDDFDWRDHGAVTNVKNQGSCGSCWSFSTTGALEGANFLATGKLESLSEQQLVDCDHECDPEEKDSCDSGCDGGLMNSAFEYTLKAGGLMREEDYPYTGSDGGRCKFDKNKIVASVSNFSVVSLDEDQIAANLVKHGPLAVAINAVYMQTYIGGVSCPYVCSKRLDHGVLMVGYGASGYSPIRRKEKPYWIIKNSWGPNWGENGYYKICKGPNVCGVDSMVSTVVAVAQH	360

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lssa7g03146	360	CDD	Peptidase-C1A	131	354	IPR039417	-
	Lssa7g03146	360	ProSitePatterns	Eukaryotic thiol (cysteine) proteases cysteine active site.	148	159	IPR000169	-
	Lssa7g03146	360	Gene3D	Cysteine proteinases	23	356	-	-
	Lssa7g03146	360	ProSitePatterns	Eukaryotic thiol (cysteine) proteases asparagine active site.	319	338	IPR025661	-
	Lssa7g03146	360	SMART	pept-c1	130	355	IPR000668	GO:0006508(InterPro)\|GO:0008234(InterPro)
	Lssa7g03146	360	Pfam	Papain family cysteine protease	130	354	IPR000668	GO:0006508(InterPro)\|GO:0008234(InterPro)
	Lssa7g03146	360	PANTHER	CYSTEINE PROTEASE FAMILY C1-RELATED	53	347	IPR013128	GO:0004197(PANTHER)\|GO:0005615(PANTHER)\|GO:0005764(PANTHER)\|GO:0008234(InterPro)\|GO:0051603(PANTHER)
	Lssa7g03146	360	FunFam	Cysteine protease RD19A	25	355	-	-
	Lssa7g03146	360	ProSitePatterns	Eukaryotic thiol (cysteine) proteases histidine active site.	295	305	IPR025660	-
	Lssa7g03146	360	PRINTS	Papain cysteine protease (C1) family signature	297	307	IPR000668	GO:0006508(InterPro)\|GO:0008234(InterPro)
	Lssa7g03146	360	PRINTS	Papain cysteine protease (C1) family signature	148	163	IPR000668	GO:0006508(InterPro)\|GO:0008234(InterPro)
	Lssa7g03146	360	PRINTS	Papain cysteine protease (C1) family signature	319	325	IPR000668	GO:0006508(InterPro)\|GO:0008234(InterPro)
	Lssa7g03146	360	SUPERFAMILY	Cysteine proteinases	41	354	IPR038765	-
	Lssa7g03146	360	SMART	Inhibitor-I29-2	47	103	IPR013201	-
	Lssa7g03146	360	Pfam	Cathepsin propeptide inhibitor domain (I29)	47	103	IPR013201	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lssa7g03146	K01373	cathepsin F [EC:3.4.22.41]

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Lssa	Lssa-Chr7:166380353	Lssa8g00818	Lssa-Chr8:28177155	dispersed
	Lssa	Lssa-Chr4:219957895	Lssa7g03146	Lssa-Chr7:166380353	wgd
	Lssa	Lssa-Chr5:269822194	Lssa7g03146	Lssa-Chr7:166380353	wgd