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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lssa7g03154 ATGGAGTCCATCATACGATTATTACTAACCCTCTCAATATCACTGCTTCTCAACACTTGTGCTTACTGCAAAAGGCCTGCTGTTGTTAATGTTGGAGCTCTGTTTTCGTTTGATTCGGTCATCGGCAAGGCTGCAAAAACAGCCATGGAAATTGCTGTAATCGATGTGAACAACGATTCAAGGATTCTTAGTGGTACGGAAATGAAGTTATTCATGGAGGACACTAATTGCAGCGTCTTCAAAGGCTCCATTGGAGCATTTCAGATGCTCGAGCAAGACGTAGTCGCAATAATCGGCCCACAATCATCAGCTGTAGCACATATGATTTCTCAGATCGCAAATGGCGTACAAGTGCCCATAATTTCATACGCTGCAACCGATCCCACTCTATCTTCCCTCCAATTCCCTTACTTCTTTCGAACAACACAAAGCGACTCATACCAGATGGCAGCCATGGCTAACTTGATCGATTTTTATGGCTGGAAAGAGGTAATTGCAATATACATCGATGATGAATATGGAAGAAACGGAGTGTTTTCTCTAGATGATGAAGTAGAAAAGAGGAAATCAAAGATTTCTTATAAGTTAGCTTTACCCACTAATTATAATCTTAAAGATATCTCCGATGTGCTTAATTATTCAATCCCACTTGGCCCTCGTGTTTATATCATCCACATTCATCCTGATCCTGCCCTCAAAATCTTTGAAGTAGCTAACAAACTTAACATGATGACTACCGATTATGTATGGTTAACAACCGATTGGCTTTGTACAACTTTACCCTCGATTACCCCAACAAATCAACCTTCTTTGAAGATCATCGAGGGCGTTGTTGGAATTTGTCAGCATACTCCACAAACATCACGAAAAAAGAACTTTGAATCGAATGTATACGGATCGTATGCTTATGACACGGTGTGGGCGGTTGCAAACACAATCGATACATTTCTTAATCAAGAAACGAATATGTCGTTTTCGTTTTTCGATTCAAAATTCGGGAAACTTAAAATCTTCGATAATGGGAAAGATTTCGTGAAGATATTATCGGAGACAAATTTCAATGGTTTGACCGGTCAAATCCAATTCAATACGGATAGAAACTTGGTTCCTAGAGGATATGAAATCGTTAATTTCGTTAAATTAGCGATTCAAAATGTTGGGTATTGGTCGAACCATTCGGGTCTCTCTATTGTCCCACCCGAATCTCTCAAAGTGGATAAAAGTAAGTTGCCCCGTTTAAATGAGAAGCTTGGTGTAATTACTTGGCCCGGTGGAAACACGGATAGGCCACGTGGATGGGTTATTGGTGATCAAGAAAGACCGTTAAGAATTGGGATACCGAAACGGGCGAGTTTTGTTGAATTTGTAACGGAATTAAGTAATCATACGATACAAGGATATTGTATCGATGTGTTTACGGAAGCAGTTAAGTTGATTCCTTATCAACTTCCTTTTAGATTTGTCCCGTTTGGAGATGGTGAAAAGAATCCAAATTATGATCTACTTGTAAAGTCCGTTACGGACGACGTTTTTGATGGAGCGGTTGGAGATATAGCTATCGTGACAAATAGGACAAAGATTGTTGATTACACACAACCTTACGCGACAACGGGTCTCGTGATTGTGGTTCCTATCAACGATTCAAAAGCGAGTGCTTGGGTGTTTCTCAGACCTTTTACTATAGAAATGTGGTGCGCTACTACGGCTGCTTTTGTTTTGATCGCTTTAGTTATCTGGCTTCTTGAGCATCGGGTTAACGACGATTTCAGGGGCCCACTTAAAAGACAACTTGTCACAATTTTTTTGTTCAGCTTTTCGACTCTGTTCAAGAGAAACCAGGAAGATACGGTTAGCCCACTTGGACGTATGGTCATGGTGGTATGGCTATTCCTATTAATGGTGATCACATCAAGCTACACCGCAAGCTTAACCTCCATTCTTACAGTCGAACAACTTTCATCACCAATAACAGGAATAGACGCGTTAGTAGCTAGCCATCTACCAATCGGCTACCAAGTTGGCTCATTTGCACATACCTATTTAGCCGAAAGTCTTTACATCCCAAAATCTAGGCTCATTCCTTTAGGCTCTCCTCAAGAATATGATAACGCGTTACGCTTGGGCCCACATCACGGAGGCGTGGCAGCCATTGTTGATGAACTTCCTTACATCGAGTTGTTTCTCTTGGAATATGCTGACTTTCGGATCGTTGGTCAACCCTTTACTAGAAGCGGATGGGGATTTGCTTTCAAGAGAGACTCACCTCTCGCCACGACACTATCTCTAGCAATCATGGAACTTTCCGAAAACGGAAAGCTTCAAGAAATCCATGACAATTGGTTCTGTAAAGACGGCTGTTCCAGTGCTGTGGGAGCTGATTCTGAACCTAATCAGCTACAAATGAGCAGCTTTTGGGGGTTATACATAATTTGTGGCGCTTTTTCACTCACTGCATTGGTTTTATTTCTTCTACAAACAATTCGTCAATATATTTATTATAAACAGCAACAGATGCTCGATCCTAGTTCCCCTATGTTCCCAGCTTCTAGGAACAGGGGCTGCTATAGCGTCTTGTTTAATTTTTTTGATTTTATCGATGAAAAAGAAGAAGCCATCAAGAACATGTTCAAGAAAGATGATCTTCCGGAAGCTTCTCGAACTGTTTGA 2667 41.06 MESIIRLLLTLSISLLLNTCAYCKRPAVVNVGALFSFDSVIGKAAKTAMEIAVIDVNNDSRILSGTEMKLFMEDTNCSVFKGSIGAFQMLEQDVVAIIGPQSSAVAHMISQIANGVQVPIISYAATDPTLSSLQFPYFFRTTQSDSYQMAAMANLIDFYGWKEVIAIYIDDEYGRNGVFSLDDEVEKRKSKISYKLALPTNYNLKDISDVLNYSIPLGPRVYIIHIHPDPALKIFEVANKLNMMTTDYVWLTTDWLCTTLPSITPTNQPSLKIIEGVVGICQHTPQTSRKKNFESNVYGSYAYDTVWAVANTIDTFLNQETNMSFSFFDSKFGKLKIFDNGKDFVKILSETNFNGLTGQIQFNTDRNLVPRGYEIVNFVKLAIQNVGYWSNHSGLSIVPPESLKVDKSKLPRLNEKLGVITWPGGNTDRPRGWVIGDQERPLRIGIPKRASFVEFVTELSNHTIQGYCIDVFTEAVKLIPYQLPFRFVPFGDGEKNPNYDLLVKSVTDDVFDGAVGDIAIVTNRTKIVDYTQPYATTGLVIVVPINDSKASAWVFLRPFTIEMWCATTAAFVLIALVIWLLEHRVNDDFRGPLKRQLVTIFLFSFSTLFKRNQEDTVSPLGRMVMVVWLFLLMVITSSYTASLTSILTVEQLSSPITGIDALVASHLPIGYQVGSFAHTYLAESLYIPKSRLIPLGSPQEYDNALRLGPHHGGVAAIVDELPYIELFLLEYADFRIVGQPFTRSGWGFAFKRDSPLATTLSLAIMELSENGKLQEIHDNWFCKDGCSSAVGADSEPNQLQMSSFWGLYIICGAFSLTALVLFLLQTIRQYIYYKQQQMLDPSSPMFPASRNRGCYSVLFNFFDFIDEKEEAIKNMFKKDDLPEASRTV 888
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lssa7g03154 888 FunFam Glutamate receptor 678 785 - -
Lssa7g03154 888 CDD GluR-Plant 440 781 - -
Lssa7g03154 888 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 233 256 - -
Lssa7g03154 888 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 102 130 - -
Lssa7g03154 888 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 42 58 - -
Lssa7g03154 888 Pfam Receptor family ligand binding region 45 379 IPR001828 -
Lssa7g03154 888 SUPERFAMILY Periplasmic binding protein-like II 418 784 - -
Lssa7g03154 888 Gene3D - 437 552 - -
Lssa7g03154 888 Gene3D - 47 370 - -
Lssa7g03154 888 CDD PBP1-GABAb-receptor-plant 30 399 IPR044440 -
Lssa7g03154 888 FunFam Glutamate receptor 437 552 - -
Lssa7g03154 888 SMART GluR-14 441 783 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Lssa7g03154 888 SUPERFAMILY Periplasmic binding protein-like I 21 398 IPR028082 -
Lssa7g03154 888 FunFam Glutamate receptor 144 320 - -
Lssa7g03154 888 PIRSF IGluLR-plant 1 880 IPR017103 -
Lssa7g03154 888 Gene3D - 144 395 - -
Lssa7g03154 888 Pfam Ligated ion channel L-glutamate- and glycine-binding site 460 543 IPR019594 GO:0015276(InterPro)|GO:0016020(InterPro)
Lssa7g03154 888 Gene3D - 553 683 - -
Lssa7g03154 888 Pfam Ligand-gated ion channel 561 812 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Lssa7g03154 888 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 29 842 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Lssa7g03154 888 FunFam Glutamate receptor 552 682 - -
Lssa7g03154 888 Gene3D - 729 788 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lssa7g03154 K05387 glutamate receptor, ionotropic, plant
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lssa Lssa-Chr7:166965072 Lssa8g03952 Lssa-Chr8:184326495 dispersed
Lssa Lssa-Chr7:166882993 Lssa7g03154 Lssa-Chr7:166965072 tandem
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lssa9g00556 . 41 828 Ion Channels gene family AT5G48410 40.269 0.0 584.0
Lssa9g00594 . 41 814 Ion Channels gene family AT5G48410 39.875 3.20e-178 556.0
Lssa9g03283 . 46 358 Ion Channels gene family AT5G55630 51.438 3.00e-110 325.0
Lssa9g00601 . 59 825 Ion Channels gene family AT3G07520 39.371 0.0 565.0
Lssa9g04396 ACH 8 779 Ion Channels gene family AT5G49890 76.684 0.0 1182.0
Lssa9g00557 . 433 810 Ion Channels gene family AT5G48410 45.619 1.07e-106 333.0
Lssa9g03507 . 90 692 Ion Channels gene family AT5G54250 75.993 0.0 953.0
Lssa9g00600 . 41 816 Ion Channels gene family AT5G48410 40.644 0.0 573.0
Lssa9g00596 . 41 816 Ion Channels gene family AT5G48410 38.186 0.0 542.0
Lssa9g00555 . 43 831 Ion Channels gene family AT3G07520 41.205 0.0 602.0
Lssa9g04291 . 46 726 Ion Channels gene family AT5G15410 73.799 0.0 1006.0
Lssa9g03274 ACH 61 352 Ion Channels gene family AT5G55630 53.425 1.23e-107 317.0
Lssa9g00034 . 52 405 Ion Channels gene family AT4G01840 58.63 5.95e-142 409.0
Lssa9g00554 . 43 831 Ion Channels gene family AT3G07520 40.667 0.0 595.0
Lssa9g02188 . 3 444 Ion Channels gene family AT2G29110 34.513 2.70e-75 251.0
Lssa9g00553 . 458 648 Ion Channels gene family AT2G29120 43.455 2.03e-53 183.0
Lssa9g03506 . 90 692 Ion Channels gene family AT5G54250 74.669 0.0 928.0
Lssa9g00595 . 42 816 Ion Channels gene family AT5G48410 40.961 0.0 580.0
Lssa8g02404 . 1 715 Ion Channels gene family AT4G30360 67.707 0.0 990.0
Lssa8g03953 . 23 897 Ion Channels gene family AT3G51480 57.662 0.0 1082.0
Lssa8g03983 . 26 86 Ion Channels gene family AT3G51480 55.738 1.36e-17 75.5
Lssa8g03485 . 17 609 Ion Channels gene family AT3G07520 36.079 2.38e-114 360.0
Lssa8g05160 . 508 713 Ion Channels gene family AT4G32500 28.205 7.31e-10 60.8
Lssa8g03489 . 23 699 Ion Channels gene family AT5G11210 34.507 3.16e-126 392.0
Lssa8g03475 . 218 329 Ion Channels gene family AT2G24720 40.336 1.24e-19 82.4
Lssa8g03478 . 42 745 Ion Channels gene family AT5G48400 35.515 3.44e-145 439.0
Lssa8g03486 . 633 833 Ion Channels gene family AT3G07520 34.466 7.20e-35 128.0
Lssa8g03952 . 23 898 Ion Channels gene family AT3G51480 58.305 0.0 1098.0
Lssa8g03894 . 192 307 Ion Channels gene family AT2G29120 41.379 3.47e-21 90.9
Lssa8g01628 . 192 307 Ion Channels gene family AT2G29120 42.241 5.47e-22 92.4
Lssa8g02139 ACH 7 857 Ion Channels gene family AT2G26650 65.914 0.0 1221.0
Lssa8g02410 . 28 138 Ion Channels gene family AT5G48410 42.478 4.58e-14 66.2
Lssa8g02236 . 7 765 Ion Channels gene family AT5G33280 73.254 0.0 1124.0
Lssa8g03479 . 747 819 Ion Channels gene family AT3G07520 37.838 1.07e-10 57.4
Lssa8g02334 . 1 717 Ion Channels gene family AT5G57940 75.724 0.0 1121.0
Lssa8g03488 . 734 816 Ion Channels gene family AT5G48410 38.824 1.08e-13 63.9
Lssa8g03484 . 747 816 Ion Channels gene family AT3G07520 38.028 2.58e-10 54.7
Lssa8g03483 . 680 745 Ion Channels gene family AT3G07520 31.343 1.01e-08 48.5
Lssa8g03476 . 495 565 Ion Channels gene family AT5G11180 45.07 2.44e-13 65.1
Lssa8g04194 . 90 370 Ion Channels gene family AT5G40890 24.306 9.26e-07 50.4
Lssa8g03487 . 54 193 Ion Channels gene family AT3G07520 35.714 2.92e-22 89.4
Lssa8g03967 . 23 879 Ion Channels gene family AT3G51480 55.865 0.0 1002.0
Lssa8g03492 . 27 749 Ion Channels gene family AT5G48400 36.081 7.42e-156 470.0
Lssa8g03954 . 25 897 Ion Channels gene family AT3G51480 55.165 0.0 1011.0
Lssa8g03473 . 12 816 Ion Channels gene family AT3G07520 32.315 5.13e-141 438.0
Lssa8g03482 . 154 616 Ion Channels gene family AT5G27100 35.983 8.35e-81 266.0
Lssa8g03490 . 44 816 Ion Channels gene family AT5G48410 36.433 1.14e-160 486.0
Lssa7g03153 . 56 932 Ion Channels gene family AT1G05200 64.027 0.0 1197.0
Lssa7g01888 . 496 893 Ion Channels gene family AT2G17260 34.988 5.16e-62 216.0
Lssa7g01783 . 39 717 Ion Channels gene family AT5G57940 76.667 0.0 1087.0
Lssa7g00482 ACH 59 352 Ion Channels gene family AT5G55630 55.442 1.09e-116 340.0
Lssa7g03154 . 11 900 Ion Channels gene family AT2G32400 53.683 0.0 1003.0
Lssa7g02636 . 48 726 Ion Channels gene family AT5G15410 66.328 0.0 883.0
Lssa7g01887 ACH 487 882 Ion Channels gene family AT2G17260 34.307 3.21e-60 211.0
Lssa7g02533 ACH 8 776 Ion Channels gene family AT5G49890 75.844 0.0 1149.0
Lssa7g01663 ACH 545 718 Ion Channels gene family AT3G02850 32.584 3.37e-12 67.8
Lssa7g02313 . 1 791 Ion Channels gene family AT5G26240 80.297 0.0 1224.0
Lssa7g00998 . 1 677 Ion Channels gene family AT5G46240 55.805 0.0 812.0
Lssa7g03633 . 261 692 Ion Channels gene family AT5G54250 78.06 0.0 713.0
Lssa7g00848 . 1 868 Ion Channels gene family AT2G29120 32.481 9.86e-148 459.0
Lssa6g03320 . 7 874 Ion Channels gene family AT2G29120 45.567 0.0 763.0
Lssa6g03322 . 32 874 Ion Channels gene family AT2G29120 46.536 0.0 774.0
Lssa6g03319 . 786 887 Ion Channels gene family AT2G29110 37.864 4.82e-17 73.2
Lssa6g03676 . 1 848 Ion Channels gene family AT2G29100 29.584 2.86e-111 362.0
Lssa6g01056 . 38 634 Ion Channels gene family AT2G28260 58.291 0.0 748.0
Lssa6g00951 . 548 715 Ion Channels gene family AT2G25600 33.333 1.98e-11 61.2
Lssa6g00971 . 42 813 Ion Channels gene family AT5G48410 40.551 0.0 549.0
Lssa6g00260 . 55 357 Ion Channels gene family AT5G55630 62.376 3.73e-137 398.0
Lssa6g03318 . 18 636 Ion Channels gene family AT2G29120 41.864 6.15e-169 506.0
Lssa6g01555 . 1 678 Ion Channels gene family AT2G28260 72.319 0.0 1030.0
Lssa6g00450 . 25 661 Ion Channels gene family AT4G32650 57.335 0.0 742.0
Lssa6g03324 . 517 640 Ion Channels gene family AT2G29120 57.937 9.02e-50 168.0
Lssa6g01054 ACH 25 675 Ion Channels gene family AT2G28260 55.199 0.0 749.0
Lssa5g00069 ACH 68 358 Ion Channels gene family AT5G55630 57.388 9.04e-121 351.0
Lssa5g02392 . 552 620 Ion Channels gene family AT2G25600 46.377 4.31e-11 56.6
Lssa5g03954 . 33 810 Ion Channels gene family AT2G24720 30.253 5.40e-110 357.0
Lssa5g03951 . 33 823 Ion Channels gene family AT2G24720 29.28 3.90e-102 336.0
Lssa5g03959 . 208 324 Ion Channels gene family AT2G24710 30.894 3.09e-10 60.1
Lssa5g03539 . 26 323 Ion Channels gene family AT5G11210 33.115 8.27e-52 179.0
Lssa5g01650 . 448 716 Ion Channels gene family AT5G57940 58.696 4.20e-104 328.0
Lssa5g00960 . 202 415 Ion Channels gene family AT2G26650 68.95 1.24e-99 308.0
Lssa5g03961 . 154 753 Ion Channels gene family AT5G11180 26.645 6.34e-58 207.0
Lssa5g03952 . 13 859 Ion Channels gene family AT5G27100 26.999 2.42e-75 259.0
Lssa5g03077 ACH 7 856 Ion Channels gene family AT2G26650 62.124 0.0 1167.0
Lssa5g03958 . 35 840 Ion Channels gene family AT2G29110 31.54 3.22e-119 383.0
Lssa5g01635 . 430 729 Ion Channels gene family AT4G30560 46.557 4.60e-68 233.0
Lssa5g03286 . 5 795 Ion Channels gene family AT4G22200 64.13 0.0 1068.0
Lssa5g03955 . 95 841 Ion Channels gene family AT2G29120 31.135 3.06e-116 372.0
Lssa5g02828 . 5 717 Ion Channels gene family AT5G57940 71.172 0.0 1049.0
Lssa5g03861 . 59 932 Ion Channels gene family AT1G05200 65.948 0.0 1239.0
Lssa5g01588 . 1 725 Ion Channels gene family AT2G24610 65.578 0.0 994.0
Lssa4g03497 . 65 363 Ion Channels gene family AT5G11210 28.239 2.35e-27 108.0
Lssa4g02466 . 4 900 Ion Channels gene family AT4G35290 60.821 0.0 1128.0
Lssa4g03495 . 687 740 Ion Channels gene family AT5G48400 47.273 1.81e-07 45.4
Lssa4g06067 . 26 699 Ion Channels gene family AT5G14870 62.411 0.0 895.0
Lssa4g01027 . 20 431 Ion Channels gene family AT4G18160 59.67 5.19e-163 464.0
Lssa4g01175 . 83 714 Ion Channels gene family AT5G53130 59.282 0.0 779.0
Lssa4g02236 . 209 725 Ion Channels gene family AT4G03560 63.956 0.0 722.0
Lssa4g02309 . 1 156 Ion Channels gene family AT4G03560 41.667 2.25e-32 120.0
Lssa4g06241 . 1 775 Ion Channels gene family AT5G40890 73.865 0.0 1189.0
Lssa4g03496 . 512 652 Ion Channels gene family AT5G48400 43.056 7.39e-33 119.0
Lssa4g01179 . 83 715 Ion Channels gene family AT5G53130 57.656 0.0 761.0
Lssa3g03155 . 192 307 Ion Channels gene family AT2G29120 41.379 8.37e-21 89.7
Lssa3g02269 ACH 16 827 Ion Channels gene family AT3G02850 69.4 0.0 1210.0
Lssa3g04786 . 1 716 Ion Channels gene family AT5G53130 64.138 0.0 942.0
Lssa3g02275 ACH 385 812 Ion Channels gene family AT3G02850 55.963 4.34e-162 485.0
Lssa3g00952 . 25 662 Ion Channels gene family AT4G32650 57.078 0.0 722.0
Lssa3g03411 . 223 307 Ion Channels gene family AT2G29120 48.235 5.96e-21 90.1
Lssa2g00648 . 6 745 Ion Channels gene family AT3G17700 56.458 0.0 817.0
Lssa2g03154 . 1 678 Ion Channels gene family AT2G28260 68.6 0.0 1002.0
Lssa2g02309 . 3 888 Ion Channels gene family AT3G51480 60.291 0.0 1129.0
Lssa2g02830 . 557 726 Ion Channels gene family AT5G15410 61.404 4.31e-67 214.0
Lssa2g00620 . 523 671 Ion Channels gene family AT3G17700 60.403 8.94e-61 198.0
Lssa2g02138 ACH 18 824 Ion Channels gene family AT3G02850 59.456 0.0 992.0
Lssa2g03526 ACH 35 675 Ion Channels gene family AT2G28260 52.181 0.0 716.0
Lssa2g00084 . 12 924 Ion Channels gene family AT1G42540 64.231 0.0 1216.0
Lssa2g00619 . 244 472 Ion Channels gene family AT3G17700 49.58 2.20e-73 236.0
Lssa2g02308 . 23 889 Ion Channels gene family AT3G51480 57.617 0.0 1079.0
Lssa2g00621 . 91 745 Ion Channels gene family AT3G17700 50.526 0.0 616.0
Lssa2g02133 ACH 61 824 Ion Channels gene family AT3G02850 65.574 0.0 1110.0
Lssa2g04431 . 1 716 Ion Channels gene family AT5G53130 74.377 0.0 1091.0
Lssa2g02829 . 54 411 Ion Channels gene family AT5G15410 49.315 3.79e-109 334.0
Lssa2g02134 ACH 19 826 Ion Channels gene family AT3G02850 64.005 0.0 1099.0
Lssa2g00618 . 6 745 Ion Channels gene family AT3G17700 57.825 0.0 810.0
Lssa1g01190 . 14 727 Ion Channels gene family AT4G30560 62.853 0.0 924.0
Lssa1g03321 . 20 430 Ion Channels gene family AT4G18160 62.892 2.56e-177 500.0
Lssa1g00991 . 1 700 Ion Channels gene family AT5G14870 58.159 0.0 852.0
Lssa1g03514 . 388 430 Ion Channels gene family AT5G26240 74.419 1.01e-14 72.8
Lssa1g04462 ACH 55 359 Ion Channels gene family AT5G55630 52.443 3.88e-119 345.0