AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lssa7g03156 ATGCATATAACAGGACCTCACTCTTCAACTCTCCTTCGTCGAGCTTCTAGGTCCTCAGCCACCAGGCTTCACTCTTCTCTTTCCGGAAAATCTTCTTCGCCGTCGCCTTCACCAGTCGCGTCTCAGTCCCGATCTCATACCACCGCATCGGCTGCTTTCCGCTCCGTCCGATCTAGATGGAGCCACGGTGTTGATTGGAAGTCTCCTGCCTCGCTGTCTTCTCAGATCAGGACTACTGCTTCTCCTGTTCTTGACCGTTTTCACCGTAGTCTCGCTACCATGGCCTCTGATCATGCTTTCAGTGGGATTTTGACTGGTCTCCCAAAGCCTGGAGGTGGAGAGTTTGGAAAGTTCTATAGTTTGCCTGCGCTGAATGATCCAAGAGTTGACAAGCTGCCATATTCAATTAGGATACTTCTCGAATCAGCCATCCGTAATTGTGACAATTTCCAAGTCACCAAGGCAGATGTCGAGAAAATCATTGATTGGGAGAAGACTTCTCCAAATCAAGTTGAGATCCCATTCAAGCCAGCTCGTGTTCTCTTGCAGGATTTTACTGGTGTGCCTGCTGTGGTAGATCTTGCTGTTATGCGTGATGCCATGAACAATCTTGGTGGGAACTCTGAAAAAATCAATCCTTTGGTTCCTGTGGATCTTGTTGTTGATCATTCAGTTCAAGTTGATGTTGCTAGGTCTGAAAATGCAGTACAAGCAAATATGGAACTTGAGTTCAAGAGAAACAAAGAAAGATTTGCTTTTCTTAAGTGGGGATCCAAAGCTTTCCAAAACATGCTTGTTGTTCCACCTGGATCCGGTATTGTGCATCAGGTCAATCTTGAATATCTTGGAAGGGTTGTTTTCAACACTGATGGGATGTTGTACCCTGATAGTGTTGTGGGAACTGATTCCCACACAACTATGATTGATGGGTTAGGTGTTGCTGGTTGGGGAGTTGGAGGAATTGAAGCAGAGGCCACAATGCTTGGGCAGCCAATGAGCATGGTTTTGCCTGGTGTTGTGGGGTTCAAGTTATCAGGGAAACTCCGCAATGGTGTAACAGCTACTGATTTGGTTTTAACTGTCACCCAAATGTTAAGAAAGCATGGTGTCGTAGGCAAATTTGTTGAATTTCATGGGGATGGTGTTGGTAAAATATCACTTGCTGACAGGGCAACCATTGCCAACATGTCACCAGAGTACGGTGCTACCATGGGGTTCTTCCCAGTGGATCATGTCACTCTTCAGTATCTCAAGTTAACTGGAAGAAGCGATGATACAGTGGCTATGATAGAAGCTTACTTACGTGCAAACAATATGTTTGTCGATTATAATGAGCCACAACAAGAAAGAGTCTACTCATCTTACTTGTCACTAGACCTTTCAGAAGTTGAACCCTGTATTTCAGGGCCCAAAAGACCTCATGACCGAGTCCCTTTGAAAGACATGAAAGCAGATTGGCATTCTTGCCTTGATAATAAAGTCGGATTCAAGGGTTTTGCTGTACCAAAAGAGACACAAGACAAAGTTGCAAAGTTTTCATTTCATGGACAGGAAGCAGAACTTAGACATGGGAGTGTTGTGATTGCTGCAATTACAAGTTGCACAAATACATCAAACCCTAGTGTCATGCTTGGGGCAGGTCTTGTTGCCAAAAAGGCCTGTGAATTAGGCCTAAAGGTCAAGCCATGGGTCAAGACAAGTCTAGCTCCAGGTTCTGGAGTTGTTACCAAATATTTGCTCCAAAGTGGGCTGCAGAAGTATCTAAATGAACAAGGGTTCAACATTGTTGGATATGGGTGCACGACATGTATTGGCAATTCAGGGGAATTGGATGAATCAGTTGGTGCAGCTATTACTGAAAATGATATCATTGCATCAGCTGTTCTTTCTGGGAATAGAAACTTTGAGGGACGTGTTCATGCCTTGACAAGAGCAAACTATCTTGCATCGCCTCCTTTGGTTGTTGCCTATGCCCTTGCTGGCACGGTTGATATCGATTTTGAGACTGAACCAATTGGTGTTGGAAAAGATGGAAAGGATGTTTATTTCAGAGATATCTGGCCAAGCACTGAAGAAATTGCAGATGCTGTTCAATCGAGTGTTCTTCCAGAAATGTTCAAGAGTACTTACAAATCCATCACCGATGGAAACCCCATGTGGAATGACCTTTCAGTCCCTCAAGCCAAACTTTACTCATGGGATCCAAACTCCACCTACATTCATGAACCCCCGTATTTCAAAAACATGACAATGGACCCCCCTGGTGCCCATGGTGTCAAGGACGCCTACTGCCTCCTCAATTTCGGTGACAGTATCACAACCGATCACATTTCGCCAGCTGGAAGCATCCACAAGGACAGCCCGGCTGCAAAGTTTCTTCTAGAACATGGTGTCGATCGTAAGGATTTTAATTCTTATGGTAGTCGACGTGGTAATGATGAGATTATGGCCAGGGGTACTTTTGCCAATATTCGTATTGTCAATAAGCTTCTGAATGGAGAAGTGGGCCCGAAAACGGTTCATATTCCTTCCGGAGAGAAATTATCCGTCTTTGATGCTGCATCCAAATACAAGGAGGCTGGTCAAGATACAATTGTGTTGGCTGGAGCAGAGTATGGAAGTGGAAGTTCCAGAGATTGGGCTGCCAAGGGCCCTATGTTATTGGGGGTTAAAGCGGTAATTGCAAAAAGCTTCGAGAGGATTCATCGTAGTAATTTGGTAGGAATGGGTATTATACCACTTTGCTTCAAAGCCGGTGAGGACGCAGACACACTAGGGTTGACTGGTCATGAAAGATACACCATTGACTTATCAAGCAACATTAATGAAATCCGCCCCGGTCAAGATGTCACAGTCAGTACTGATACCGGAAAGTCATTCACGTGTGTCGCCCGCTTTGACACTGAGGTGGAATTGGCGTATTTCAACCATGGTGGAATTCTTCCATATGTTATCCGACAACTAGCGGCACAAAAATGA 2979 44.88 MHITGPHSSTLLRRASRSSATRLHSSLSGKSSSPSPSPVASQSRSHTTASAAFRSVRSRWSHGVDWKSPASLSSQIRTTASPVLDRFHRSLATMASDHAFSGILTGLPKPGGGEFGKFYSLPALNDPRVDKLPYSIRILLESAIRNCDNFQVTKADVEKIIDWEKTSPNQVEIPFKPARVLLQDFTGVPAVVDLAVMRDAMNNLGGNSEKINPLVPVDLVVDHSVQVDVARSENAVQANMELEFKRNKERFAFLKWGSKAFQNMLVVPPGSGIVHQVNLEYLGRVVFNTDGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEATMLGQPMSMVLPGVVGFKLSGKLRNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGVGKISLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVAMIEAYLRANNMFVDYNEPQQERVYSSYLSLDLSEVEPCISGPKRPHDRVPLKDMKADWHSCLDNKVGFKGFAVPKETQDKVAKFSFHGQEAELRHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLKVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFNIVGYGCTTCIGNSGELDESVGAAITENDIIASAVLSGNRNFEGRVHALTRANYLASPPLVVAYALAGTVDIDFETEPIGVGKDGKDVYFRDIWPSTEEIADAVQSSVLPEMFKSTYKSITDGNPMWNDLSVPQAKLYSWDPNSTYIHEPPYFKNMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKFLLEHGVDRKDFNSYGSRRGNDEIMARGTFANIRIVNKLLNGEVGPKTVHIPSGEKLSVFDAASKYKEAGQDTIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADTLGLTGHERYTIDLSSNINEIRPGQDVTVSTDTGKSFTCVARFDTEVELAYFNHGGILPYVIRQLAAQK 992
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lssa7g03156 992 FunFam Aconitate hydratase 98 465 - -
Lssa7g03156 992 ProSitePatterns Aconitase family signature 2. 592 605 IPR018136 -
Lssa7g03156 992 Gene3D Aconitase, domain 4 754 990 IPR015928 -
Lssa7g03156 992 Pfam Aconitase family (aconitate hydratase) 158 661 IPR001030 -
Lssa7g03156 992 Gene3D Aconitase, domain 3 99 465 IPR015931 -
Lssa7g03156 992 ProSitePatterns Aconitase family signature 1. 526 542 IPR018136 -
Lssa7g03156 992 MobiDBLite consensus disorder prediction 1 48 - -
Lssa7g03156 992 SUPERFAMILY Aconitase iron-sulfur domain 112 726 IPR036008 -
Lssa7g03156 992 PRINTS Aconitase family signature 293 306 IPR001030 -
Lssa7g03156 992 PRINTS Aconitase family signature 592 605 IPR001030 -
Lssa7g03156 992 PRINTS Aconitase family signature 240 253 IPR001030 -
Lssa7g03156 992 PRINTS Aconitase family signature 465 479 IPR001030 -
Lssa7g03156 992 PRINTS Aconitase family signature 530 541 IPR001030 -
Lssa7g03156 992 PRINTS Aconitase family signature 383 396 IPR001030 -
Lssa7g03156 992 PRINTS Aconitase family signature 307 322 IPR001030 -
Lssa7g03156 992 PRINTS Aconitase family signature 264 272 IPR001030 -
Lssa7g03156 992 PRINTS Aconitase family signature 369 382 IPR001030 -
Lssa7g03156 992 FunFam Aconitate hydratase 753 990 - -
Lssa7g03156 992 CDD AcnA-IRP-Swivel 767 937 IPR044137 -
Lssa7g03156 992 FunFam cytoplasmic aconitate hydratase 466 689 - -
Lssa7g03156 992 Gene3D Aconitase, domain 3 466 689 IPR015931 -
Lssa7g03156 992 SUPERFAMILY LeuD-IlvD-like 730 988 - -
Lssa7g03156 992 CDD AcnA-IRP 179 663 - -
Lssa7g03156 992 Gene3D - 690 751 - -
Lssa7g03156 992 NCBIfam aconitate hydratase AcnA 116 988 IPR006249 -
Lssa7g03156 992 Pfam Aconitase C-terminal domain 790 918 IPR000573 -
Lssa7g03156 992 PANTHER ACONITASE-IRON-RESPONSIVE ELEMENT FAMILY MEMBER 97 989 IPR006249 GO:0003994(PANTHER)|GO:0005739(PANTHER)|GO:0005829(PANTHER)|GO:0006099(PANTHER)|GO:0006101(PANTHER)|GO:0030350(PANTHER)|GO:0051539(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lssa7g03156 K01681 aconitate hydratase [EC:4.2.1.3]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lssa Lssa-Chr7:166978221 Lssa9g03425 Lssa-Chr9:167425332 dispersed
Lssa Lssa-Chr7:166978221 Lssa2g00926 Lssa-Chr2:73801278 transposed