AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lssa7g03166 | ATGAAGCAATCGGGTATGACGACGACATTGATGATATTCATCGTCATAGCAATGGCAGAAATTATCAGTGGAGAAGACCCTTATAGATTCTTCACCTGGAATGTTACTTATGGTGACATCTACCCTCTTGGAGTTAAACAACAGGGGATTTTGATAAACGGACAATTTCCAGGGCCACAAATCGATTCAGTGACTAATGACAATGTGATTGTTAGTATCTACAACAGCTTGGATGAACCATTCCTCATTACCTGGAACGGGATACAACAGAGAAGGAATTCATGGCAGGATGGAGTTTATGGCACGAATTGCCCCATTCCACCTGGTCAAAACTTCACCTACATTCTTCAAGTAAAGGATCAAATCGGTAGCTTCTTCTACTTCCCTTCCCTTGCTTTTCATCGAGCTGCCGGAGGCTTCGGTGGCATCACCGTCTCCAGCCGTCCAATGATCCCGGTTCCATTCCCGCCACCCGCCGGAGATTTCACCATTCTCGCCGGTGACTGGTTCAAGCAAAACCACACTGATTTGAAAGCAATTCTAGACGGAGGCCATGATCTTCCATTCCCAGATGGGCTTCTCATCAATGGCCGTGGATCTAATGGATTTACATTCACAGTTGATCAAGGGAAAACTTACAGATTGAGGATTTCAAACGTGGGGCTTACAACATCGATCAATTTCAGAATCCAAGGGCATAAGATGCTGTTAGTTGAGGTCGAAGGGACTCATACTCTTCAGAACACATACTCTTCTCTTGATATTCATCTAGGCCAGTCGTACTCCGTTTTGGTCATCGCCGATCAACCACCGCAGGACTACTACATGGTCGTTTCAACCCGATTCACCTCTCAAGTCCTCTCCGCAACCTCCATTCTTCATTACAGCAACTCTCCGGGAACTTTTCCGGCTCCCCCACCTGGTGGCCCAACCATTCAAATCGACTGGTCTCTAAATCAAGCTCGATCTATCAGGCAAAACTTGACGGCGAGTGGACCGAGGCCAAACCCACAAGGCTCCTACCATTACGGAATGGTTAACTTCACTCGAACGATCAGGCTCGCGAACTCTGCTCCGATCATCAATGGAAAACAGAGGTACGCCGTCAACAGCGTCTCTTTTATTCCGGCGGACACCCCTCTCAAGATCGCTGATTACTTCAAGATCTCTGGTGTGTTTTCCATTGGAACGATCTCCGATAGCCCCACCGGTGGTGGTGGTTACCTCCAGACTTCCGTCATGGCTGCTGATTTCAGAGCGTTTGCTGAGATTGTGTTTGAGAATTCGGAAGATACTGTACAATCATGGCACATTGATGGCCACTTCTTCTTCGTTGTCGGGATGGATGGAGGTCCATGGTCATCTGACAGCAGAACAAGTTACAATTTAAGAGATGGGATTTCTCGCTCTACAGTTCAGGTTTATCCGCATTCGTGGACTGCCTTGTATGTGCCAATGGACAACGTGGGAATGTGGAACATAAGGTCTCAAAATTGGGCTCGACAGTATTTAGGTCAACAATTTTATCTTCGGGTTTATTCACCTGTTAATTCATGGAGAGACGAATACCCGATCCCGAAGAACGCGATTACTTGTGGGCGTGCAAGCGGTCGCAAGACTCGTCCTTTGTAA | 1632 | 47.12 | MKQSGMTTTLMIFIVIAMAEIISGEDPYRFFTWNVTYGDIYPLGVKQQGILINGQFPGPQIDSVTNDNVIVSIYNSLDEPFLITWNGIQQRRNSWQDGVYGTNCPIPPGQNFTYILQVKDQIGSFFYFPSLAFHRAAGGFGGITVSSRPMIPVPFPPPAGDFTILAGDWFKQNHTDLKAILDGGHDLPFPDGLLINGRGSNGFTFTVDQGKTYRLRISNVGLTTSINFRIQGHKMLLVEVEGTHTLQNTYSSLDIHLGQSYSVLVIADQPPQDYYMVVSTRFTSQVLSATSILHYSNSPGTFPAPPPGGPTIQIDWSLNQARSIRQNLTASGPRPNPQGSYHYGMVNFTRTIRLANSAPIINGKQRYAVNSVSFIPADTPLKIADYFKISGVFSIGTISDSPTGGGGYLQTSVMAADFRAFAEIVFENSEDTVQSWHIDGHFFFVVGMDGGPWSSDSRTSYNLRDGISRSTVQVYPHSWTALYVPMDNVGMWNIRSQNWARQYLGQQFYLRVYSPVNSWRDEYPIPKNAITCGRASGRKTRPL | 543 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lssa7g03166 | 543 | Gene3D | - | 28 | 149 | IPR008972 | - | |
| Lssa7g03166 | 543 | Pfam | Multicopper oxidase | 34 | 148 | IPR011707 | GO:0005507(InterPro) | |
| Lssa7g03166 | 543 | Gene3D | - | 160 | 334 | IPR008972 | - | |
| Lssa7g03166 | 543 | Pfam | Multicopper oxidase | 379 | 515 | IPR011706 | GO:0005507(InterPro)|GO:0016491(InterPro) | |
| Lssa7g03166 | 543 | SUPERFAMILY | Cupredoxins | 155 | 335 | IPR008972 | - | |
| Lssa7g03166 | 543 | Pfam | Multicopper oxidase | 161 | 298 | IPR001117 | - | |
| Lssa7g03166 | 543 | CDD | CuRO-1-AAO-like-1 | 30 | 145 | IPR034273 | GO:0005507(InterPro) | |
| Lssa7g03166 | 543 | FunFam | Monocopper oxidase-like protein | 345 | 542 | - | - | |
| Lssa7g03166 | 543 | SUPERFAMILY | Cupredoxins | 22 | 175 | IPR008972 | - | |
| Lssa7g03166 | 543 | SUPERFAMILY | Cupredoxins | 345 | 534 | IPR008972 | - | |
| Lssa7g03166 | 543 | FunFam | Monocopper oxidase-like protein | 159 | 333 | - | - | |
| Lssa7g03166 | 543 | PANTHER | MULTI-COPPER OXIDASE | 29 | 509 | IPR045087 | GO:0016491(PANTHER) | |
| Lssa7g03166 | 543 | Gene3D | - | 344 | 540 | IPR008972 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lssa7g03166 | K19791 | iron transport multicopper oxidase |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Lssa | Lssa-Chr4:371206035 | Lssa7g03166 | Lssa-Chr7:168049799 | dispersed | |
| Lssa | Lssa-Chr7:168049799 | Lssa9g02076 | Lssa-Chr9:68226538 | dispersed | |
| Lssa | Lssa-Chr4:91423451 | Lssa7g03166 | Lssa-Chr7:168049799 | transposed | |
| Lssa | Lssa-Chr8:37728804 | Lssa7g03166 | Lssa-Chr7:168049799 | transposed | |
| Lssa | Lssa-Chr8:201991256 | Lssa7g03166 | Lssa-Chr7:168049799 | transposed | |
| Lssa | Lssa-Chr9:52766022 | Lssa7g03166 | Lssa-Chr7:168049799 | transposed | |
| Lssa | Lssa-Chr9:67567902 | Lssa7g03166 | Lssa-Chr7:168049799 | transposed | |
| Lssa | Lssa-Chr6:6395498 | Lssa7g03166 | Lssa-Chr7:168049799 | wgd | |
| Lssa | Lssa-Chr7:20957075 | Lssa7g03166 | Lssa-Chr7:168049799 | wgd | |
| Lssa | Lssa-Chr7:168049799 | Lssa9g03881 | Lssa-Chr9:196213576 | wgd |