Gene detail

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lssa7g03193	ATGGAGAATTTGCCTGAATCGTTGTATGTGGATCCGGAAGGTGGTTCTAGCTCTAATTCCGCCCCAAAGAACACCGCCAGACGACAACCACAACCACAACAGTTCTCGGCGTCTGATCGTGCTGAAATTCAGCAGTTGATCAACTTGCTTAACCACCCTCATACAAGAGCTGAGGCTATTACGCAGCTCAACAGGGTGTACACGAGGCACAAGTTGTTTGTTCAAAATCTGTTTTCTCCCCAATCTACTGTTCTTATAGCGTCGAAATTGGTGATGAGAGTTTTCCGATCACTTTATAAGTCGTCGGCGACGCCACACCGGTCTTGTGATATCAGATCACATTCAAATGATGAGAAAAGAAAGACTTTGTTGTTTAGCAATGGAAAAGGAGGTCGTGAGTTGGGGTTGCTACTTTGGAATTCAAGAGACACAATCTTTTCATTGTTGGAGGAACTTTTGGGGGTATACAAGTTGTTGTCGCCTCCTAAGCTTGGTATGGGGGAAGCTACAAGAGTTTGTAATGCACTGGCCTTACTTCAGTGCATTGCAACTCATCCCGATACAAGACTCGAACTTCTCAAAGCCCATATACCTGTATACATATACCCTTTTCTCAACACCACTGAGAAACAACTTGTGCACTATGATTACTTGCGAGTTAACAGCCTAGGTGTCATTGGGGCCCTTCTCAAGGAACAATGCCCAAAAACTGATGAAATCGTTCATTATCTTTTGCAAAGTGAAATGGTTCCTTTGTGCCTCCGTTGCATGGACGTGGGTAGCGACCTCACAAAATCCGTTGCAGCATTTGTGATTGGCAAGATTTTAGGTGAACCAGAAGGAAAGACCTACTGTGGGACATTTGCAGAGAGATTTTTTTCAGTGTCCAGGGCTTTGTCAAAAATGGTGGATGAGTTTTCTGGAAAGCCGTCACCCGCGTTGTTGAAAAATACGCTAATTTGCTACCTTCGACTCTCCGAAATATCGAGGTGCTGTAATGTGTTGAAGAAACGCTACCCTGAGCGATTGAGGAACCCCGTATACCTCAACCATGTCTGTGATGGAAATACTAGAGCTCTGGCTGAACAGGTGCTACAAAACATCATGGGAAGACAGCAAGTTGAAGCTGTACCAGTGGAAGCCTTAGTTTCAGCCACGAGATCCATGCAAACGTAG	1176	44.9	MENLPESLYVDPEGGSSSNSAPKNTARRQPQPQQFSASDRAEIQQLINLLNHPHTRAEAITQLNRVYTRHKLFVQNLFSPQSTVLIASKLVMRVFRSLYKSSATPHRSCDIRSHSNDEKRKTLLFSNGKGGRELGLLLWNSRDTIFSLLEELLGVYKLLSPPKLGMGEATRVCNALALLQCIATHPDTRLELLKAHIPVYIYPFLNTTEKQLVHYDYLRVNSLGVIGALLKEQCPKTDEIVHYLLQSEMVPLCLRCMDVGSDLTKSVAAFVIGKILGEPEGKTYCGTFAERFFSVSRALSKMVDEFSGKPSPALLKNTLICYLRLSEISRCCNVLKKRYPERLRNPVYLNHVCDGNTRALAEQVLQNIMGRQQVEAVPVEALVSATRSMQT	391

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lssa7g03193	391	PANTHER	UNCHARACTERIZED	24	372	IPR007216	GO:0000932(PANTHER)\|GO:0006402(InterPro)\|GO:0017148(PANTHER)\|GO:0030014(InterPro)\|GO:0030015(PANTHER)
	Lssa7g03193	391	MobiDBLite	consensus disorder prediction	12	38	-	-
	Lssa7g03193	391	SUPERFAMILY	ARM repeat	171	369	IPR016024	-
	Lssa7g03193	391	Gene3D	-	35	369	IPR011989	-
	Lssa7g03193	391	Pfam	Cell differentiation family, Rcd1-like	124	368	IPR007216	GO:0006402(InterPro)\|GO:0030014(InterPro)
	Lssa7g03193	391	MobiDBLite	consensus disorder prediction	1	38	-	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lssa7g03193	K12606	CCR4-NOT transcription complex subunit 9

Event-related genes

Select	Gene_1	Gene_2	Event_name
	128083	Lssa7g03193	Lssa9g03869

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Lssa	Lssa-Chr1:39217774	Lssa7g03193	Lssa-Chr7:169687520	transposed
	Lssa	Lssa-Chr7:169687520	Lssa9g03869	Lssa-Chr9:195397393	wgd

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	Lssa	Rcd1	8.8e-73	No_clan		TR	Rcd1-like