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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lssa7g03195 ATGGCATTGAATAGAGCTGGATCGTGTAATCCGGCCGTCGTGAAGATCGGAATTACTTTCTTGGGGCTGTGTTTGGTGGGTTATCTACTAGGTCCACCTTTATACTGGCATGTTCTTGAAGGGTTAGCCGCCGTACGCCGCTCATCCTCCGCCGCTTCCTGCCCTCCCTGCAATTGCGACTGCGATTCTCAGCCGCTCCTCTCCATTCCTCAAGCATTAAGCAATGGTTCATTCACAGATTGTGCAAAACATGACCCTGAAGTAACGGGAGACACAGAGAAGAATTTCTCAGAGCTTCTATCAGAAGAACTAAAGCTTCGTGAAGCTGAATCTTTAGAAAGTCAACAACGTGCTGACATGGCACTTCTTGAAGCCAAAAAGCTAACATCACAGTATCAGAAAGAAGCTGACAAGTGTAATTCAGGAATGGAAACTTGTGAAGAAGCGCGTGAAAAAGCCGAATTGGCTTTATTATCACAAAAACAACAATCTGAAATGTGGGAATTAAGAGCTCGACAAAAAGGGTGGAAGGAAAGCAGCAATGCAAGGTCTGTAAACACCATATGA 567 45.15 MALNRAGSCNPAVVKIGITFLGLCLVGYLLGPPLYWHVLEGLAAVRRSSSAASCPPCNCDCDSQPLLSIPQALSNGSFTDCAKHDPEVTGDTEKNFSELLSEELKLREAESLESQQRADMALLEAKKLTSQYQKEADKCNSGMETCEEAREKAELALLSQKQQSEMWELRARQKGWKESSNARSVNTI 188
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lssa7g03195 188 Coils Coil 106 126 - -
Lssa7g03195 188 Pfam Protein of unknown function (DUF1068) 12 178 IPR010471 -
Lssa7g03195 188 PANTHER EXPRESSED PROTEIN 1 183 - -
Lssa7g03195 188 Coils Coil 143 163 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lssa7g03195 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
127494 Lssa5g03864 Lssa7g03195
128085 Lssa7g03195 Lssa9g03866
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lssa Lssa-Chr7:169696885 Lssa8g02287 Lssa-Chr8:94975147 dispersed
Lssa Lssa-Chr7:169696885 Lssa9g03866 Lssa-Chr9:195308468 wgd