Gene detail

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lssa7g03197	ATGGCAGAAACCCTAAGCCCTAGCCGTACACCAGGCCACAAACAGAGAGCTTCGGTCCTCTCCCCGGATCGACCTTTATTTTTGGGATCTAACGATGATAAGCTCGAACGTGCTCAAGCACGCGCCGCTCGTGCTGCAGCGATCCGCCGGAAGCCTGTCGCGATTAATCAAGCAAACGATGCTAATCCTGCCGACCCTTGTCTTGGCCAAGAGCAGATTATGGAGTTGTTTCAGAATTGCATCAAACTCGCCAGTGAAAATAAAATTAATCAGAAGAATACGTGGGAGCTGAATCTGATAGATCATCTTTGCGACATTATTAAGGTTGAAGAAGAGAACGACGTGGAGACCAATTTTCAGAAGGCTAGCTGCACCCTTGAAGCTGGAGTTAGAATATACTCAATGAGGGTGGATTCAGTTCATTCTGAGGCATATAAGGTTCTTGGAGGCATTAGTCGAGTTGCACTAGAAGCTGAACAAGATACTGTAGAAGATGGCAAGACTGAAAACATGCCAGGAGAATGCACTTCAAAGAAAGAAAAGGAAATAAAGCTATCTCCTTTATCAACATTGGAATCATCCTTTGAGGCTCTTAATGTGAAGAAATTTGATGGTAGTGATTCAACAGAATATCTTTTGTTTGTACTTTGGGCATATACAAAAACTTACAGAAAAAACCATTTCATTTTTGTAGTTGCATTTGCTGTGGATCCTCTCTATCATCAAACAACCGCACAATTTGATGAAGGAGGATCAAAAGGTCTTTTACTAAATAACCTTGGAGTCTATGGTGGATGCCGAATGATATTTGATTCACTTGAAGTACCTTCAAAGTGCATGTTATCTTCAAATGAAAATAAAATAGATACAATTGATATCTCTTATACCAAAGATTGTATAGAGCAAATGGCATCAAACTTTACAAAGAAACTTGAAATCTCACCAAGTTTGAAGGAAATAGTGAACATGTTTGATGAAGATAACAAAAGACCAGTGGATACGTTTTCTTCTTCCCAAAACTCCATAGAACCAGATCATGAAGCTTTTGAAGGTGACTTCAATGGTGGTGAAACTGAAAACGATAATTCAGGGACATGGGACTTTATCAATGACAACCAGACAAGTCTGAATGATGATGACACTTATGATGGAGATGATGGACACTTTGAACAACCTGATCATCTTCAGGAAAACGAGGCATATGTTACTACTCATGATGATGAAAAATCCTCAACAGTTGACAATTTCTTGTTTCTAAGCCTTGGATTAACTGGAAAACATAACGCATGGGCTGGACCTGAACATTGGAAGTATCGAAAAACTAAAGGTCCAGAAGAGGTTGTGAAGGAAAACGGATCACCATTAATGGCGAAAAGTAAAAGAAACAAGAAACAAGAACCTGATATAGATTTCACAAAAGCATTGGAATCAGATAGTGATTTGGATAGTATCTTTGCTCCTCCTAAAAACCCTAAGACATTACTTCTTCCTGCAAATAGAGAATCTGTTAGCACAATGCTTCCGGAAGATTGCCATTATCAACCAGAGGATCTTGTCAAACTTTTTCTTCTTCCAAATGTTATGTGCCTTGGGAAGAGAGGAAGAAGATATTCGGATGAAGAAGGAGAAGGGAATAATAATAATAATGAAACATTTGCATCATGGGATAATGATTGTGGCCAATTTGATGATGGAAATGTTTATAATAGTGATATTGAAGACTCCACCACACTCGTCTCTCAGCCACGCCAGGTAAACAAGATTGAAGTGGAGTATGATAGAACATCAAAACAAGTTGATGTTCAAGCACTCAAGGAAATTCTTTGGTCATCTATTCAAGAAACACATGTTTCGCCTCAAAAGGAGACGAAGGAGTTGTCTTTCAAGGAAATGTTGTCGGCTTTTCCAACCGATGTGAAAAAACAAGCGGCTGCATCGATCGATGCAATCTCTCCGCATTTGTGTTTTATATGTTTGTTGCATTTGGCTAATGAGCATGGATTGAGCATCCATGGATGTGATCTTTTGGATGATCTCACCATATATGTTCCCTCCATATAG	2061	39.3	MAETLSPSRTPGHKQRASVLSPDRPLFLGSNDDKLERAQARAARAAAIRRKPVAINQANDANPADPCLGQEQIMELFQNCIKLASENKINQKNTWELNLIDHLCDIIKVEEENDVETNFQKASCTLEAGVRIYSMRVDSVHSEAYKVLGGISRVALEAEQDTVEDGKTENMPGECTSKKEKEIKLSPLSTLESSFEALNVKKFDGSDSTEYLLFVLWAYTKTYRKNHFIFVVAFAVDPLYHQTTAQFDEGGSKGLLLNNLGVYGGCRMIFDSLEVPSKCMLSSNENKIDTIDISYTKDCIEQMASNFTKKLEISPSLKEIVNMFDEDNKRPVDTFSSSQNSIEPDHEAFEGDFNGGETENDNSGTWDFINDNQTSLNDDDTYDGDDGHFEQPDHLQENEAYVTTHDDEKSSTVDNFLFLSLGLTGKHNAWAGPEHWKYRKTKGPEEVVKENGSPLMAKSKRNKKQEPDIDFTKALESDSDLDSIFAPPKNPKTLLLPANRESVSTMLPEDCHYQPEDLVKLFLLPNVMCLGKRGRRYSDEEGEGNNNNNETFASWDNDCGQFDDGNVYNSDIEDSTTLVSQPRQVNKIEVEYDRTSKQVDVQALKEILWSSIQETHVSPQKETKELSFKEMLSAFPTDVKKQAAASIDAISPHLCFICLLHLANEHGLSIHGCDLLDDLTIYVPSI	686

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lssa7g03197	686	MobiDBLite	consensus disorder prediction	1	26	-	-
	Lssa7g03197	686	MobiDBLite	consensus disorder prediction	332	392	-	-
	Lssa7g03197	686	MobiDBLite	consensus disorder prediction	1	15	-	-
	Lssa7g03197	686	PANTHER	CONDENSIN COMPLEX SUBUNIT 2	232	682	IPR022816	GO:0000796(InterPro)\|GO:0000799(PANTHER)\|GO:0003682(PANTHER)\|GO:0007076(PANTHER)\|GO:0007076(InterPro)
	Lssa7g03197	686	Pfam	Condensin complex subunit 2	24	204	IPR022816	GO:0000796(InterPro)\|GO:0007076(InterPro)
	Lssa7g03197	686	Pfam	Condensin complex subunit 2	565	681	IPR022816	GO:0000796(InterPro)\|GO:0007076(InterPro)
	Lssa7g03197	686	Pfam	Condensin complex subunit 2	233	552	IPR022816	GO:0000796(InterPro)\|GO:0007076(InterPro)
	Lssa7g03197	686	MobiDBLite	consensus disorder prediction	448	468	-	-
	Lssa7g03197	686	MobiDBLite	consensus disorder prediction	356	377	-	-
	Lssa7g03197	686	PIRSF	Condensin-H	229	574	IPR022816	GO:0000796(InterPro)\|GO:0007076(InterPro)
	Lssa7g03197	686	PIRSF	Condensin-H	560	684	IPR022816	GO:0000796(InterPro)\|GO:0007076(InterPro)
	Lssa7g03197	686	PIRSF	Condensin-H	4	210	IPR022816	GO:0000796(InterPro)\|GO:0007076(InterPro)

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lssa7g03197	K06676	condensin complex subunit 2

Event-related genes

Select	Gene_1	Gene_2	Event_name
	128086	Lssa7g03197	Lssa9g03865

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Lssa	Lssa-Chr7:169745827	Lssa9g03865	Lssa-Chr9:195304489	wgd