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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lssa7g03201 ATGCATTTACTGACCTCTTCACTTGTCAATCTTAGAAGCTCAGGTGGAATGCCATCATCTCATTCTTCAACTGTGGTGGCACTTGCAGTATCCATAGGTCTACATGAAGGAATTGAATCATCAACATTTGCCATTGCTGTTGTCTTGGCTTTTATTGTTATGTATGATGCATCTGGAGTCAGACTCCATGCTGGACGCCAAGCTGAAGTTTTAAACCAAATTGTTTGTGAATTTCCTCCTGAACACCCTTTATCCACATCCAGACCTCTTCGTGATTCTCTTGGACATACTCCATTACAGGTGGTTGCAGGGGCTGTGTTAGGAGTTATGGTGGCATTCGTGATGAAAACATCTGATTAA 360 42.22 MHLLTSSLVNLRSSGGMPSSHSSTVVALAVSIGLHEGIESSTFAIAVVLAFIVMYDASGVRLHAGRQAEVLNQIVCEFPPEHPLSTSRPLRDSLGHTPLQVVAGAVLGVMVAFVMKTSD 119
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lssa7g03201 119 PANTHER ACID PHOSPHATASE-VANADIUM-DEPENDENT HALOPEROXIDASE-RELATED PROTEIN 11 117 IPR003832 -
Lssa7g03201 119 Pfam Divergent PAP2 family 10 111 IPR003832 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lssa7g03201 K09775 uncharacterized protein
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lssa Lssa-Chr4:5024064 Lssa7g03201 Lssa-Chr7:169790378 dispersed
Lssa Lssa-Chr5:6668720 Lssa7g03201 Lssa-Chr7:169790378 dispersed
Lssa Lssa-Chr7:169790378 Lssa3g01055 Lssa-Chr3:41953309 transposed