AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lssa7g03216 ATGGAAGACACACCGGCAACCAACATCGGCGGAGACGCTCACCAGGAAATGATCGCAGCATTCTCAGAGATTACTTCTGCTACCAAAGAAGAAGCCTCCTTCTTCCTCGAATCGCACAACTTCGATCTCGATTCCGCCGTCTCCACCTTCTTCGAAACCGCTGCCGCCGTAGAAGAGGCTCCTGTGTCTGCCTTACCTGGCCGAAACCCTAACCGGCCTTCTGATACACATTCCCCTTCATTCTCTCCGTCGTCTTCTCCGTCTCGCTCCCGATCAGCCTCCCCACCTCCTGCTATTGGTTTACAAAATCCTTACAATCTACGATCTAGGAACACCGCTACGGATAAGAAACCATCAGGTAGTCGGTCTACTGGACGCATACGGACTTTCTCAGATCTGAATCGACAGGGCGATGACTCCGGAAGTGACTCCGATGAGCCCCAGGAGTATTATACCGGTGGTGAAAAGAGTGGAATGCTTGTTCAAGATCCATCAAGGGTAAATGATGTGGAATCATTGTTCAATCAAGCTCGACAAGCAGGAGCAGAAGAAGGAACACTCGAACAACTCCAACCATCTTCAAGCTCCAGAAGCTTTGCAGGAAGAGGAAGATTACTATCTGGAGAGACAACATCAGCCACTCCTCAAGTCTCTGAACCTGATGTTCATACTCACACCATCACTTTCTGGACCAATGGTTTCACTGTTAACGATGGCCCTTTGAGAAGACTCGATGATCCCCAAAATGCATCTTTCTTGGAGAGCATAAGGAAGTCTGAATGTCCAGAAGAGCTTAGGCCTGCAAAAGGAAGAGCTCCTGTTCATGTCAGTCTTGTGAGGAAGCTTGAAGACTTCCCTGTTCAGAAACAACGCCACACTGCGTTTGTGGGTGTGGGTAGAACCCTAGGCACCACCACCACCACTTCATCAGAAGACGCCACCATTACACCGCCGCCTGCCACCGCTGCACCAACCCCACTGGCGGGGCTAGTGGTGGATGACGCACTACCTTCAACCTCAATTCAACTGAGATTGGGCGATGGGACCCGTATGGTTTCTAGATTCAATTTCCACCACACGATTGGTGATATCCGATCTTTCATTGATGCATCAAGGCCTGGAGGATCTAGGGTTTATCAGCTTTTGACAATGGGGTTCCCGCCAAAGCAGCTTAATGATTTGAATCAGACGATTGAAGGAGCTGGGTTAGCGAATTCGGTTGTGATACAGAAACTCTAG 1239 49.72 MEDTPATNIGGDAHQEMIAAFSEITSATKEEASFFLESHNFDLDSAVSTFFETAAAVEEAPVSALPGRNPNRPSDTHSPSFSPSSSPSRSRSASPPPAIGLQNPYNLRSRNTATDKKPSGSRSTGRIRTFSDLNRQGDDSGSDSDEPQEYYTGGEKSGMLVQDPSRVNDVESLFNQARQAGAEEGTLEQLQPSSSSRSFAGRGRLLSGETTSATPQVSEPDVHTHTITFWTNGFTVNDGPLRRLDDPQNASFLESIRKSECPEELRPAKGRAPVHVSLVRKLEDFPVQKQRHTAFVGVGRTLGTTTTTSSEDATITPPPATAAPTPLAGLVVDDALPSTSIQLRLGDGTRMVSRFNFHHTIGDIRSFIDASRPGGSRVYQLLTMGFPPKQLNDLNQTIEGAGLANSVVIQKL 412
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lssa7g03216 412 Pfam UBX domain 337 411 IPR001012 GO:0005515(InterPro)
Lssa7g03216 412 SMART faf-3 218 312 IPR012989 -
Lssa7g03216 412 FunFam Plant UBX domain-containing protein 4 287 412 - -
Lssa7g03216 412 Pfam SEP domain 227 300 IPR012989 -
Lssa7g03216 412 ProSiteProfiles SEP domain profile. 222 286 IPR012989 -
Lssa7g03216 412 PANTHER UBX DOMAIN CONTAINING PROTEIN 13 411 - GO:0000045(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0007030(PANTHER)|GO:0031468(PANTHER)|GO:0043130(PANTHER)|GO:0043161(PANTHER)|GO:0061025(PANTHER)
Lssa7g03216 412 FunFam Plant UBX domain-containing protein 4 222 284 - -
Lssa7g03216 412 CDD UBX-UBXN2 340 411 - -
Lssa7g03216 412 MobiDBLite consensus disorder prediction 302 322 - -
Lssa7g03216 412 MobiDBLite consensus disorder prediction 181 202 - -
Lssa7g03216 412 Gene3D - 287 412 - -
Lssa7g03216 412 Gene3D SEP domain 222 284 IPR036241 -
Lssa7g03216 412 Gene3D - 12 54 - -
Lssa7g03216 412 MobiDBLite consensus disorder prediction 186 202 - -
Lssa7g03216 412 SUPERFAMILY NSFL1 (p97 ATPase) cofactor p47, SEP domain 219 307 IPR036241 -
Lssa7g03216 412 MobiDBLite consensus disorder prediction 61 161 - -
Lssa7g03216 412 MobiDBLite consensus disorder prediction 69 137 - -
Lssa7g03216 412 SUPERFAMILY Ubiquitin-like 295 410 IPR029071 -
Lssa7g03216 412 SUPERFAMILY UBA-like 13 52 IPR009060 GO:0005515(InterPro)
Lssa7g03216 412 ProSiteProfiles UBX domain profile. 334 411 IPR001012 GO:0005515(InterPro)
Lssa7g03216 412 MobiDBLite consensus disorder prediction 302 316 - -
Lssa7g03216 412 Pfam UBA-like domain 15 54 - -
Lssa7g03216 412 SMART ubx-3 333 412 IPR001012 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lssa7g03216 K14012 UBX domain-containing protein 1
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lssa Lssa-Chr1:79947670 Lssa7g03216 Lssa-Chr7:170430972 transposed
Lssa Lssa-Chr4:8824258 Lssa7g03216 Lssa-Chr7:170430972 transposed
Lssa Lssa-Chr8:100457942 Lssa7g03216 Lssa-Chr7:170430972 transposed
Lssa Lssa-Chr7:19409706 Lssa7g03216 Lssa-Chr7:170430972 wgd