AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lssa7g03221 ATGGATTCTACAGATGCTAATGATGGCATGATTAGCATCGGCGGAGGAATAAATGCGAAAGAGCTAGATCATGCTCTTATGGTGGAAATGGCATCCACCGCCGGTTTGGATTTAGGTTCGGAAGCGGTTTCGGATGATCAGATAACACCTCTTTTGACGCAGCAGCCGGAGAAGCCCAGACTCGATATCTTCTCTGTCTCGTACCCTAAACGGAAAACTAACAAGGACCAAATTCCGAGATTAACTGAATCGGAAACATCACCATTTACACAGTTCATAATGTGGTCATGGAGTGGATCTAGATATTCTGGTTTGGTATGCATGGCGTTATCGTCTTCTGTCTACTGTATCATGACAATTCTTTCCAATGTGTTCTCTGCTCAAGCAATTCCCCTATTTGAGATAGCATTTACAAGATGCATAATTATCTCAGCATTATCATTCATGTGGTTAAGAAGAAGCTCACAGCCATTATTTGGACCTGTAAATGCCACAAGTCTATTTGTTTCAAGAGCTGTTACTGGCTCTATTTCTTTAATAACTTTCATCTACTGCATCCAGAGATTACCATTGTCTCAATCCATGCTCTTGAGCTTTACAATTCCATTAACAGCTTCAATATCTGCAAGATTCATTCTTCATGAGAATCTAAAACTTGCAGAAATAGCAGCCATTGTTTCCAGTTTCTTTGGTGTAATCTTCATCATCAGATCAATGGTCAGCGTGCAAGGTACAGAAGGAGGTGAACAAGTAGATGGAATACATTATTTTTATGTGTTTTTGATTGGTTTATTATCATCATTGACTGGTGGAATGAGCTACTGTTTTATAAGGGCTGGAGCTAAACAGTCTGATCAACCTGTGGTGACTATATTTTCATTTGGTTTAGTCTCTACTCCTGCTGCAGCAATATGCATGATCACATTTGAAGATTTTGTGCTTCCTAGCTTCTATTCTTTCTTTCTTATGATTATACTTGCCATATTGGCGTTTGTTGCTGAGTTGTTTTTAGCACGTGCGCTTCAGCTTGAGAAAACTAGCAAAGTTGCAAATATTCAATATCTTGAGGTGGCATTATCACAGTTATGGGGTATAGCATCATCAAGGGTAACCCCTACGTTTGGTGGTTTCATTGGATCCTTCATCATATTCATATCAATTTCTTGCACCATGTATTTAGGGCCTGAAAAAGACATGGAGTGA 1203 39.4 MDSTDANDGMISIGGGINAKELDHALMVEMASTAGLDLGSEAVSDDQITPLLTQQPEKPRLDIFSVSYPKRKTNKDQIPRLTESETSPFTQFIMWSWSGSRYSGLVCMALSSSVYCIMTILSNVFSAQAIPLFEIAFTRCIIISALSFMWLRRSSQPLFGPVNATSLFVSRAVTGSISLITFIYCIQRLPLSQSMLLSFTIPLTASISARFILHENLKLAEIAAIVSSFFGVIFIIRSMVSVQGTEGGEQVDGIHYFYVFLIGLLSSLTGGMSYCFIRAGAKQSDQPVVTIFSFGLVSTPAAAICMITFEDFVLPSFYSFFLMIILAILAFVAELFLARALQLEKTSKVANIQYLEVALSQLWGIASSRVTPTFGGFIGSFIIFISISCTMYLGPEKDME 400
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lssa7g03221 400 Pfam EamA-like transporter family 104 236 IPR000620 GO:0016020(InterPro)
Lssa7g03221 400 PANTHER ACYL-MALONYL CONDENSING ENZYME-RELATED 94 389 - GO:0016021(PANTHER)
Lssa7g03221 400 SUPERFAMILY Multidrug resistance efflux transporter EmrE 142 237 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lssa7g03221 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lssa Lssa-Chr4:227958016 Lssa7g03221 Lssa-Chr7:171022211 dispersed
Lssa Lssa-Chr5:275461050 Lssa7g03221 Lssa-Chr7:171022211 dispersed