AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lssa7g03243 | ATGGGTATCACTGGAGAACTCGTGAGGAGTGTGTTCTCCAAAAATCGATCTTTTGGAACCACCCATGACACCAATGTTATGAGAACGAATTCGGTTGAAAGAAAGAGATGGTCGTCTGTGAGATCGTATCTTTGTGGCGATGAATTCAATTCGGTTTTAGCAGAAGAAGATTCGGCTTCTAGAAGATTCTCCAGTTCAGTTTTTCTTGAAGATTACTCTGGTTCTGCAAGAACTTCAAAAGCTACTGTTTTTAGTTCACGAATTGACGATGGGTCTGAAGCTACAGTCACACAACCCATTTCAGAAAACTCAAATGAAAGTTTACACGACTACAAAAAGACCAATTTGCCCTTCGAACATGATGCTGCAGTTGTCATTCAATCAGCTTTTAGAAGCTTTCTGGTAATTTCACAAATTTCTCAAACCAGTGTTCATCTTTTTCTTGTTCTTCGTGTCGAAATGCTTATGAGTTTTGAGAATTTTCAGGCTAGGAATCGGAATGGAAAAGAAAGAGTTGAATCGGTGAATGTTTGTGATTTAGAGGTTGCGGTGGCCACCGGAAGTCCTGGGAGGGCGTCGATAGCTACGTCGGTGGAAGTTCAAACGGGAAACTCGGTGGTGGAAGTTAACGAAGGTTGCAACAGTTTTGCTCATCGTATGTCAAATCAGAAGGGGGTAAAAGTACAAGTGTCGAAGCTTAAGGAAGATTGGGATGATAGCACAGTGAGTAGCAACATATCAAAAATGAGGATTCAAAATAGACTCGAGGCATCTACAAGACGCGAAAGAGCACTCGCATATGCTTTCTCACAACAGTTAAGGATTTGCTCAAAGAAGAAGCAAAATGTGAGAAGCGGGAATGATTCAGAAACGAACATGAGTTGGAGTTGGCTTGAAAGATGGATGGCTACTCGACAACATGATACTTCTTTTGGGGACTTAAGCAAACAATTTGAAGAATTAAATGTGAATCAAAAGTTAATGGTGAAAAAGAAAGTTATATCAGATTTAGCAGGGGAAGAGAAGGAAAGCTGTGGATCAAATGAAGTTTCTATCCATTCTGATAATGTTTCGTTGAGCTCAAAAACAGCTGAAAAATCTTACTATAAGCCCACTCGAAACAGGCTCAAGGCAACAAGGCAAAAATCCTCAACGGGTTATAAGGAGTATTCTAAGATGAATAGGCCAGGAGGAGTAAGAGAAATTAGATGTGAAGATCAACAATAA | 1227 | 40.1 | MGITGELVRSVFSKNRSFGTTHDTNVMRTNSVERKRWSSVRSYLCGDEFNSVLAEEDSASRRFSSSVFLEDYSGSARTSKATVFSSRIDDGSEATVTQPISENSNESLHDYKKTNLPFEHDAAVVIQSAFRSFLVISQISQTSVHLFLVLRVEMLMSFENFQARNRNGKERVESVNVCDLEVAVATGSPGRASIATSVEVQTGNSVVEVNEGCNSFAHRMSNQKGVKVQVSKLKEDWDDSTVSSNISKMRIQNRLEASTRRERALAYAFSQQLRICSKKKQNVRSGNDSETNMSWSWLERWMATRQHDTSFGDLSKQFEELNVNQKLMVKKKVISDLAGEEKESCGSNEVSIHSDNVSLSSKTAEKSYYKPTRNRLKATRQKSSTGYKEYSKMNRPGGVREIRCEDQQ | 408 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lssa7g03243 | 408 | PANTHER | IQ-DOMAIN 5-RELATED | 219 | 379 | - | - | |
| Lssa7g03243 | 408 | MobiDBLite | consensus disorder prediction | 394 | 408 | - | - | |
| Lssa7g03243 | 408 | MobiDBLite | consensus disorder prediction | 354 | 408 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lssa7g03243 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Lssa | Lssa-Chr7:172289779 | Lssa7g03521 | Lssa-Chr7:186107827 | dispersed | |
| Lssa | Lssa-Chr7:172289779 | Lssa8g00744 | Lssa-Chr8:25949158 | transposed |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Lssa9g03618 | ACH | 45 | 140 | IQD Protein family | AT2G33990 | 53.125 | 1.55e-25 | 96.7 | |
| Lssa9g03619 | ACH | 141 | 254 | IQD Protein family | AT3G15050 | 48.718 | 4.35e-29 | 103.0 | |
| Lssa8g00744 | ACH | 1 | 383 | IQD Protein family | AT5G03040 | 41.492 | 4.06e-82 | 260.0 | |
| Lssa8g01868 | . | 243 | 475 | IQD Protein family | AT1G19870 | 42.678 | 2.37e-37 | 137.0 | |
| Lssa8g02976 | . | 1 | 160 | IQD Protein family | AT5G03960 | 42.593 | 2.02e-17 | 80.5 | |
| Lssa8g03172 | ACH | 1 | 353 | IQD Protein family | AT3G16490 | 45.758 | 1.19e-61 | 201.0 | |
| Lssa8g00298 | ACH | 82 | 331 | IQD Protein family | AT5G07240 | 41.237 | 2.58e-38 | 139.0 | |
| Lssa8g02270 | . | 1 | 374 | IQD Protein family | AT4G14750 | 47.549 | 8.99e-92 | 279.0 | |
| Lssa8g01171 | . | 204 | 794 | IQD Protein family | AT1G19870 | 39.237 | 2.54e-93 | 306.0 | |
| Lssa7g03521 | ACH | 1 | 247 | IQD Protein family | AT3G15050 | 48.819 | 2.40e-74 | 226.0 | |
| Lssa7g02679 | . | 243 | 475 | IQD Protein family | AT1G19870 | 38.235 | 2.29e-35 | 131.0 | |
| Lssa7g03243 | . | 1 | 400 | IQD Protein family | AT5G35670 | 40.444 | 6.48e-73 | 233.0 | |
| Lssa7g00009 | ACH | 11 | 532 | IQD Protein family | AT4G00820 | 51.773 | 4.25e-146 | 429.0 | |
| Lssa6g00277 | ACH | 1 | 481 | IQD Protein family | AT4G23060 | 39.13 | 1.96e-65 | 216.0 | |
| Lssa6g02943 | ACH | 1 | 480 | IQD Protein family | AT4G23060 | 35.331 | 4.32e-40 | 152.0 | |
| Lssa6g00510 | . | 1 | 413 | IQD Protein family | AT2G26180 | 56.951 | 5.54e-144 | 416.0 | |
| Lssa6g01080 | ACH | 1 | 450 | IQD Protein family | AT5G03040 | 48.148 | 7.07e-118 | 349.0 | |
| Lssa6g02217 | . | 5 | 516 | IQD Protein family | AT3G59690 | 42.086 | 1.32e-105 | 322.0 | |
| Lssa5g04551 | ACH | 1 | 341 | IQD Protein family | AT3G16490 | 44.722 | 2.56e-51 | 174.0 | |
| Lssa5g04142 | ACH | 1 | 353 | IQD Protein family | AT3G16490 | 53.181 | 8.66e-90 | 274.0 | |
| Lssa5g02683 | . | 114 | 183 | IQD Protein family | AT4G00820 | 55.714 | 7.01e-16 | 80.1 | |
| Lssa5g02483 | . | 114 | 205 | IQD Protein family | AT4G00820 | 63.043 | 8.59e-31 | 115.0 | |
| Lssa4g04881 | . | 1 | 81 | IQD Protein family | AT3G51380 | 44.737 | 8.17e-19 | 73.6 | |
| Lssa4g04218 | . | 114 | 205 | IQD Protein family | AT4G00820 | 61.957 | 1.57e-30 | 115.0 | |
| Lssa4g03304 | . | 1 | 414 | IQD Protein family | AT1G72670 | 43.213 | 1.12e-88 | 273.0 | |
| Lssa4g04704 | . | 1 | 374 | IQD Protein family | AT4G14750 | 30.99 | 3.77e-38 | 139.0 | |
| Lssa4g03924 | . | 114 | 205 | IQD Protein family | AT4G00820 | 61.957 | 7.53e-31 | 116.0 | |
| Lssa4g01787 | . | 1 | 236 | IQD Protein family | AT3G15050 | 45.238 | 2.10e-63 | 199.0 | |
| Lssa4g05986 | ACH | 1 | 132 | IQD Protein family | AT1G14380 | 46.212 | 1.46e-21 | 94.7 | |
| Lssa4g03467 | . | 1 | 353 | IQD Protein family | AT3G16490 | 50.248 | 3.33e-91 | 278.0 | |
| Lssa4g01040 | . | 1 | 443 | IQD Protein family | AT5G13460 | 41.615 | 9.78e-97 | 296.0 | |
| Lssa4g05993 | . | 1 | 252 | IQD Protein family | AT1G14380 | 43.446 | 2.58e-49 | 174.0 | |
| Lssa3g03313 | ACH | 1 | 134 | IQD Protein family | AT1G14380 | 43.919 | 9.80e-21 | 92.0 | |
| Lssa3g03314 | . | 108 | 153 | IQD Protein family | AT1G74690 | 63.043 | 3.61e-11 | 61.6 | |
| Lssa3g04028 | . | 1 | 379 | IQD Protein family | AT3G22190 | 53.927 | 7.90e-100 | 301.0 | |
| Lssa3g00488 | . | 11 | 534 | IQD Protein family | AT4G00820 | 45.73 | 1.57e-122 | 368.0 | |
| Lssa3g04042 | . | 1 | 386 | IQD Protein family | AT3G22190 | 53.616 | 3.85e-100 | 302.0 | |
| Lssa2g04311 | ACH | 7 | 340 | IQD Protein family | AT5G62070 | 44.729 | 4.34e-45 | 156.0 | |
| Lssa2g03548 | ACH | 1 | 460 | IQD Protein family | AT5G03040 | 53.586 | 1.60e-145 | 422.0 | |
| Lssa2g03718 | ACH | 1 | 421 | IQD Protein family | AT3G52290 | 51.515 | 1.21e-116 | 346.0 | |
| Lssa2g02872 | ACH | 1 | 575 | IQD Protein family | AT1G74690 | 39.527 | 2.49e-77 | 253.0 | |
| Lssa2g00456 | . | 1 | 345 | IQD Protein family | AT1G19870 | 35.933 | 7.13e-50 | 183.0 | |
| Lssa2g04473 | . | 11 | 534 | IQD Protein family | AT4G00820 | 35.971 | 1.24e-74 | 243.0 | |
| Lssa1g00827 | . | 146 | 201 | IQD Protein family | AT4G00820 | 54.93 | 2.19e-15 | 71.2 | |
| Lssa1g01977 | ACH | 1 | 449 | IQD Protein family | AT5G03040 | 49.127 | 1.46e-118 | 351.0 | |
| Lssa1g02707 | . | 1 | 517 | IQD Protein family | AT3G59690 | 47.518 | 3.11e-141 | 415.0 | |
| Lssa1g03400 | . | 1 | 469 | IQD Protein family | AT3G49260 | 45.102 | 2.81e-97 | 298.0 | |
| Lssa1g04118 | . | 1 | 241 | IQD Protein family | AT3G15050 | 43.911 | 1.02e-61 | 194.0 |