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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lssa7g03277 ATGTCGTTGGTCGTCGAAGCTGTTTCTAGTTCCACTAACATGGGACTCGAAGAAAATAAAGGAGACAAGACTGAAATTGAAGATAATGGAGATGAAAAAGGAAGCGAATCCTCCATTTGTGAAACCGAAGACGAAGGAGAAGATGCAGAGAGTCATAAGATCGATTTGGGTCCTCAATACACCCTCAAACAACAATTCGAGAAAGACAAAGATGATGAGAGTCTCACAAAGTGGAAAGAACAACTACTTGGAAATGTCGACATTAATGCTGTTGGAGAATCATTAGAACCAGAAGTGAAGATCTTGAGTCTTTCGATCATGTCTCCGGGGAGATCTGACATTGTTCTTCCGATACCCGAAGATGGAAAACCGAAGGGTCCATGGTTTACTTTGAAAGAAGGTTGTCCTTATAGCCTTCGGTTTTCATTTCAAGTTAGCCATAACATTGTTTCAGGTTTAAAGTACACCAACAATGTATGGAAAACTGGCGTCAAAGTGGATGGAATGAAACATATGCTTGGTACTTTTAGTCCCCAACAAGAAGCTTACACTTATGACATGCCAGAGGACACAACCCCTTCTGGTTATTTTGCAAGAGGCTCTTACTCTGCTAAAACTAAGTTTGTTGATGATGATGGCAAATGTTACTTGGAGATCAACTATACGTTTGACATCAGGAAAGATTGGGCCAACGTTGAACTACCTAAAACGCGATAG 717 40.73 MSLVVEAVSSSTNMGLEENKGDKTEIEDNGDEKGSESSICETEDEGEDAESHKIDLGPQYTLKQQFEKDKDDESLTKWKEQLLGNVDINAVGESLEPEVKILSLSIMSPGRSDIVLPIPEDGKPKGPWFTLKEGCPYSLRFSFQVSHNIVSGLKYTNNVWKTGVKVDGMKHMLGTFSPQQEAYTYDMPEDTTPSGYFARGSYSAKTKFVDDDGKCYLEINYTFDIRKDWANVELPKTR 238
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lssa7g03277 238 Gene3D Coagulation Factor XIII, subunit A, domain 1 50 231 IPR024792 -
Lssa7g03277 238 PANTHER RHO GDP-DISSOCIATION INHIBITOR 33 229 IPR000406 GO:0005094(PANTHER)|GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0005829(PANTHER)|GO:0007266(PANTHER)|GO:0007266(InterPro)|GO:0016020(PANTHER)
Lssa7g03277 238 MobiDBLite consensus disorder prediction 1 58 - -
Lssa7g03277 238 PRINTS RHO protein GDP dissociation inhibitor signature 149 165 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Lssa7g03277 238 PRINTS RHO protein GDP dissociation inhibitor signature 208 225 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Lssa7g03277 238 PRINTS RHO protein GDP dissociation inhibitor signature 166 181 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Lssa7g03277 238 MobiDBLite consensus disorder prediction 1 17 - -
Lssa7g03277 238 FunFam Rho GDP-dissociation inhibitor 1 52 231 - -
Lssa7g03277 238 Pfam RHO protein GDP dissociation inhibitor 42 228 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Lssa7g03277 238 SUPERFAMILY E set domains 37 230 IPR014756 -
Lssa7g03277 238 MobiDBLite consensus disorder prediction 18 54 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lssa7g03277 K12462 Rho GDP-dissociation inhibitor
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Event-related genes

Select Gene_1 Gene_2 Event_name
128090 Lssa7g03277 Lssa9g03833
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lssa Lssa-Chr7:174184428 Lssa9g03338 Lssa-Chr9:163925907 dispersed
Lssa Lssa-Chr9:46365741 Lssa7g03277 Lssa-Chr7:174184428 transposed
Lssa Lssa-Chr7:207771637 Lssa7g03277 Lssa-Chr7:174184428 transposed
Lssa Lssa-Chr7:174184428 Lssa9g03833 Lssa-Chr9:192512308 wgd