AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lssa7g03289 ATGGGTAAGTTCTTGAGTGTTCTTTTTTGCATCTTGATATCGAATCTGGCTGTTTCAAGTGCTCAAAATTGCAATACTTATGCCTTTCGAAACAACGCTATCTACGCTACTTGTGTTTCGTTACCTGTTTTGGACTCGCATCTCCACTGGAACTACCTCACCAACGGCACCGTCGACTTGGCTTTCCGGCACACCGGAGCCACCACATCTCAATGGGTTGCTTGGGCGCTTAATATCGGTGGGTCGGGTATGATTGGGGCTCAAGCGCTTGTTGCTGTTACAAGCCCAAACGGGTCGGTTCAAGCTTACACTTCTGCAGTTTCTAGTTATGGAACGAGTCTACAACCGAGCACTTTGAGCTTCGAGGTGCCGAGGATTACGGCGGAGAGAGTTAACGACGTGGTGGTGATTTACGCGACTATAGTGTTGCCTAATGGAGGAACGGGATTTAATCAGGTATGGCAAGTGGGTCCTGTCGATAATGGAGTTCCGGGTATTCATGCACTCGGTAGTGATAATCGGGGTTCTGTCGGAAGGGTTGATTTTATCTCCGGTCAGACTACTTCCGGCGGTCGTGTTGGTGGGTCGCTAGTGCGCCGGAGAAACACTCATGGAGTATTGAACGCTGTTAGTTGGGGAGTAATGATGCCCATGGGAGCAATGACAGCAAGATATTTGAAGGTGTTCAAAGTCGGTAATCCAGCCTGGTTTTACATCCACGCCGCTTGCCAAACTTCAGCCTACATCGTCGGTGTCGCCGGATGGGCCACCGGACTCAAACTCGGCGGCGACTCTACCGGAATCACATTTGAATCTCACCGGAACATCGGGATCATCCTCTTTTCACTCGGAACACTTCAGGTTTTTGCTCTACTGTTGAGGCCTAAACCCGACAACAAATACAGAATATACTGGAACGTTTACCACCATGGCCTTGGATACGCTGTGATTGCTTTGAGCATTGTCAATGTCTACAAGGGGCTTGATATCTTGGACCCTGAGAAGAAGTGGAAGAACGCATACACAGGAATACTTATTGGTTTGGGGGTTGTTGCAGTTCTTTTGGAAGCTTTCACATGGTTCATCGTCTTGAAGAGGAAGAAGGAAGACCAAAGGACACATGCAGGAGCTAATGGATATGGTCAATCAGTGTAG 1155 48.57 MGKFLSVLFCILISNLAVSSAQNCNTYAFRNNAIYATCVSLPVLDSHLHWNYLTNGTVDLAFRHTGATTSQWVAWALNIGGSGMIGAQALVAVTSPNGSVQAYTSAVSSYGTSLQPSTLSFEVPRITAERVNDVVVIYATIVLPNGGTGFNQVWQVGPVDNGVPGIHALGSDNRGSVGRVDFISGQTTSGGRVGGSLVRRRNTHGVLNAVSWGVMMPMGAMTARYLKVFKVGNPAWFYIHAACQTSAYIVGVAGWATGLKLGGDSTGITFESHRNIGIILFSLGTLQVFALLLRPKPDNKYRIYWNVYHHGLGYAVIALSIVNVYKGLDILDPEKKWKNAYTGILIGLGVVAVLLEAFTWFIVLKRKKEDQRTHAGANGYGQSV 384
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lssa7g03289 384 CDD DOMON-CIL1-like 35 184 IPR045265 -
Lssa7g03289 384 FunFam Cytochrome b561 and DOMON domain-containing protein 182 372 - -
Lssa7g03289 384 CDD Cyt-b561-FRRS1-like 180 357 - -
Lssa7g03289 384 ProSiteProfiles Cytochrome b561 domain profile. 163 364 IPR006593 -
Lssa7g03289 384 PIRSF UCP037471 1 383 IPR017214 -
Lssa7g03289 384 PANTHER CYTOCHROME B561 AND DOMON DOMAIN-CONTAINING PROTEIN 7 368 - -
Lssa7g03289 384 Gene3D - 188 374 - -
Lssa7g03289 384 Pfam Eukaryotic cytochrome b561 204 328 IPR006593 -
Lssa7g03289 384 Pfam Protein of unknown function (DUF568) 84 182 IPR045265 -
Lssa7g03289 384 ProSiteProfiles DOMON domain profile. 44 157 IPR005018 -
Lssa7g03289 384 SMART 561-7 203 328 IPR006593 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lssa7g03289 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
127491 Lssa5g03805 Lssa7g03289
128091 Lssa7g03289 Lssa9g03827
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lssa Lssa-Chr7:174983929 Lssa9g03827 Lssa-Chr9:191499227 dispersed
Lssa Lssa-Chr5:273871200 Lssa7g03289 Lssa-Chr7:174983929 wgd
Lssa Lssa-Chr7:174983929 Lssa9g03819 Lssa-Chr9:191346116 wgd