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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lssa7g03290 ATGGCTATAGGTTTAAGCTCTCCATCCATTCTATATATCTCCACCATTCTTATTTCTCTTTTCTTCTCTACATCTTCTCAAACTTGTTCAAATCACACTTTCACGTCCAAAAGAACCTTCACTTCCTGCAAAGACCTTCCATATCTCAATGCTCATCTTCACTGGACTTACTTCAAGTCCACAAATCAATCCAAGATCGCATTTCGGGCCCCACACACTCCAAAGGGGTGGATCGCATGGGCAATCAATCCATACAGAAGAAGCATGGTTGGATCACAAGCACTCATAGCTTTTCGGAATACTAAAGGCATGATGTCAGCATACACAACAACAATCACAGGGTACAACCCATCAATGCAGCCTAAAAAACTCTCCTTCCATGTTTCAAAGCTTTCAGTCGAGTATTCAAACAATGAGATAACCATTTTTGCGGTTGTGGGCCCACTTGCAAATGGGCCGGTTGTTAACCAAGTGTGGCAAGTTGGGAGCTTGGATCAGAATGGTGTTCCTATGATGCATGAAATGGAGTTTCAGAATCTTCAATCGAAAGATGTTATTGATTTTTCGTCTTTTTGA 576 41.49 MAIGLSSPSILYISTILISLFFSTSSQTCSNHTFTSKRTFTSCKDLPYLNAHLHWTYFKSTNQSKIAFRAPHTPKGWIAWAINPYRRSMVGSQALIAFRNTKGMMSAYTTTITGYNPSMQPKKLSFHVSKLSVEYSNNEITIFAVVGPLANGPVVNQVWQVGSLDQNGVPMMHEMEFQNLQSKDVIDFSSF 191
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lssa7g03290 191 CDD DOMON-CIL1-like 40 190 IPR045265 -
Lssa7g03290 191 Pfam Protein of unknown function (DUF568) 89 188 IPR045265 -
Lssa7g03290 191 ProSiteProfiles DOMON domain profile. 49 162 IPR005018 -
Lssa7g03290 191 PANTHER CYTOCHROME B561 AND DOMON DOMAIN-CONTAINING PROTEIN 10 190 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lssa7g03290 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lssa Lssa-Chr7:175150377 Lssa9g00574 Lssa-Chr9:16597918 dispersed
Lssa Lssa-Chr7:175150377 Lssa7g03291 Lssa-Chr7:175151625 tandem