AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lssa7g03302 ATGCAAATTTTGTATTTTCTTTCACCACCAAACACACACACAACTATGAATTCAACACTTCTGAGAACATCACCATTCATCCATCGTCGCCCTTTACACTCTTCACGAATCCCGGAGCCTTTTGCCCCCTTTCGATACCATGTCAATACAAAACCATTATGGAAACACAAGCTTCAGATTTCACGAACCTCTAGTTTCTTCGATGCCAAAGTATACCCAAAGAATCCCATAACCAGAGAAATTGTACCCGAAGAATCTACCAAAGATTCGTCAAGAAAAGAGGGTTTTGAGAAGTTTGGGGGTTTATTGAGATGCGGATTTCTTCTCGGTCTGTTGGTTTTGGGGGTAATTCGATGCCAAAGAGCTCTCGCATTTGATCCTGGTAGCGATTTAGGGGTTTTGGCACAGACGGGCGTTGTTCATACGCAAGGCTTCTGGAATGGGCCCAAAATTTCACAGATTTTCCGAGTTTTCAGAGAACAAGGTTTGATTTTAGCCGCACTTTTGGGCTTATCTGCCTTCTTCTCCATGGCCGAGACTTCGATCACCACTCTTTCCCCTTGGAAGGTGAGAGAGTTAGCTGAAAAAGAAGATGAAAATGGCGTCTTCAAGCTCCTTCGTACCGATATCACACGATTCCTCACCACCATTCTCATTGGCACAACTGTAGTCAACATTGGAGCTACTGCACTTTTTACAGAAGCAGCAACAACAGTGTTTGGTGAAGCTGGTGTTAGTGCAGCAACTGGTGTCATGACTGTTGTTGTATTACTTCTCACTGAAATCACACCCAAAAGTATAGCTGTTCATAATGCTACTGCTGTTGCTAGGGCTGTGGTTCGTCCAGTTGCATGGCTCTCAATTGTTTTATATCCAGTTGGAAGAGTTGTAACTTTTCTTTCAATGGGAATGCTTAAAATTCTTGGTTTAAAAGGGAAAAGTGAGCCATCTGTGACAGAAGATGAACTCAAGTTGATGTTGAGGGTTGCTGAGTTGAGTGGGGCCATTGAGGAAGAAGAACAAGATATGATTGAGAATGTGTTGGAGATAAAAGATACTCATGTGAAAGAGGTTATGACTCCTCTTATAGATGTAGTTGCAGTTGATTCTGGAGCAACATTAGTTGATTTTCATCAATTATGGGTGACTCATCAATACTCTAGGGTGCCTGTATTTGAGCAACGAATTGATAACATTGTGGGTGTGGCGTATGCAATGGATTTGTTGGATCTTGTTCAGAAAGGAGATATGCTGGAAACTGCTATGGTGGGAGAGATTGCTCATAAGCCTGCTTATTTTGTCCCTGATTCAATGTTGGTTTGGAATCTTCTTAGGGAATTTCGCATCCGGAAGGTCCACATGGCAGTTGTTCTTAATGAATATGGAGGAACAGTTGGAATCGTAACCCTTGAGGATGTTGTTGAAGAAATTGTTGGTGAAATCTTCGATGAGAATGACTCAAAGGAGGAAATTGATAGAAAAACTGGGAATATTGTGAAGAGAGGGGATGGAGTCTTTGATGTTGATGCAAATACATCAATTGATCAACTTTGTGAAGATTTAGATATTATTTTGCCAGAGGATCATCAATATGAGACAGTTTCAGGGTTTATATGTGAAGCATTTGGATATATACCAAGAACAGGTGAAAGTGTTAAAGTAATTCTTAAAAAAGCAAATGAAGAAGAAGATGATGAGAGTAAACAAGAAAATAAGAATGAAGATCAGAAAGAAAAATCCCAAACATTCAAGCTTGAGATATTGGCAGGAAATTGTAGAAAAGTAAATACAGTAAGATTTGAAAGAATAAACAATCATTCAGCAAAAGAAATCAAGGAAGCAGCTCGAATCATTCCAAGATTTTGGAAAAAAAATTGGAAAAATTACGAAAGCTCAGGAAGTGGTGATGATGAAACATTTTATCAAGAAACACCCCAAACCACCACCATTAACAACAACCAATGA 1965 39.69 MQILYFLSPPNTHTTMNSTLLRTSPFIHRRPLHSSRIPEPFAPFRYHVNTKPLWKHKLQISRTSSFFDAKVYPKNPITREIVPEESTKDSSRKEGFEKFGGLLRCGFLLGLLVLGVIRCQRALAFDPGSDLGVLAQTGVVHTQGFWNGPKISQIFRVFREQGLILAALLGLSAFFSMAETSITTLSPWKVRELAEKEDENGVFKLLRTDITRFLTTILIGTTVVNIGATALFTEAATTVFGEAGVSAATGVMTVVVLLLTEITPKSIAVHNATAVARAVVRPVAWLSIVLYPVGRVVTFLSMGMLKILGLKGKSEPSVTEDELKLMLRVAELSGAIEEEEQDMIENVLEIKDTHVKEVMTPLIDVVAVDSGATLVDFHQLWVTHQYSRVPVFEQRIDNIVGVAYAMDLLDLVQKGDMLETAMVGEIAHKPAYFVPDSMLVWNLLREFRIRKVHMAVVLNEYGGTVGIVTLEDVVEEIVGEIFDENDSKEEIDRKTGNIVKRGDGVFDVDANTSIDQLCEDLDIILPEDHQYETVSGFICEAFGYIPRTGESVKVILKKANEEEDDESKQENKNEDQKEKSQTFKLEILAGNCRKVNTVRFERINNHSAKEIKEAARIIPRFWKKNWKNYESSGSGDDETFYQETPQTTTINNNQ 654
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lssa7g03302 654 CDD CBS-pair-CorC-HlyC-assoc 354 475 IPR044751 -
Lssa7g03302 654 SUPERFAMILY CBS-domain pair 342 481 IPR046342 -
Lssa7g03302 654 Pfam Transporter associated domain 500 602 IPR005170 -
Lssa7g03302 654 Pfam Cyclin M transmembrane N-terminal domain 163 340 IPR002550 -
Lssa7g03302 654 Gene3D - 494 600 IPR016169 -
Lssa7g03302 654 Pfam CBS domain 423 478 IPR000644 -
Lssa7g03302 654 Pfam CBS domain 355 412 IPR000644 -
Lssa7g03302 654 ProSiteProfiles CBS domain profile. 359 420 IPR000644 -
Lssa7g03302 654 SUPERFAMILY FAD-binding-transporter-associated domain-like 497 610 IPR036318 GO:0050660(InterPro)
Lssa7g03302 654 SMART CorC-HlyC-2 499 604 IPR005170 -
Lssa7g03302 654 MobiDBLite consensus disorder prediction 631 654 - -
Lssa7g03302 654 MobiDBLite consensus disorder prediction 560 579 - -
Lssa7g03302 654 Coils Coil 556 579 - -
Lssa7g03302 654 Gene3D - 334 489 IPR046342 -
Lssa7g03302 654 ProSiteProfiles CBS domain profile. 427 484 IPR000644 -
Lssa7g03302 654 ProSiteProfiles CNNM transmembrane domain profile. 154 340 IPR002550 -
Lssa7g03302 654 SMART cbs-1 364 413 IPR000644 -
Lssa7g03302 654 SMART cbs-1 430 478 IPR000644 -
Lssa7g03302 654 PANTHER HEMOLYSIN-RELATED 137 613 - -
Lssa7g03302 654 FunFam Magnesium-cobalt efflux protein CorC 336 486 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lssa7g03302 K03699 magnesium and cobalt exporter, CNNM family
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lssa Lssa-Chr7:175745360 Lssa7g03997 Lssa-Chr7:209551341 dispersed