Gene detail

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lssa7g03306	ATGGTGGGACTATCTGTTGGAGAGAAGCATTTTATACAGGGAGGAATTGCTCAAGACCTTCGTACAGATGGGCGTAAAAGATTAACTTATCGCCCCATATCTGTTGAAACTGGAGCAAATGGTTCAGCAAGAGTAAAGATGGGTAAAACTGAAGTCATAGCTAGTGTGAAGGCTGAATTAGGAAGACCAAATTCTTCAGCCCCTGACAAAGGAAAAGTTTCCATATACATCGATTGCAGTCCTACAGCAGCACCACAATACGAGGGAAGAGGAGGCGAAGAATTGTCAATGGAACTCTCTGCAGCCTTGCGACAATGTCTTCTGGGTGGTAAAACTGGAGCAGGAGCTGGAATTAATCTTTCATCTTTGTCAATAGTGGATGGGAAAGTGTGCTGGGATTTATACATTGATGGTCTTGTGATAAATATAGATGGAAATATACTCGATGCCTTAGGTGCTGCTATCAAGGCTGCTTTAAGCAACACAGGTATCCCAAAAGTCAATGTTGCTTCAACTGCTCCTTCTGATGAACAACCAGAAGTTGATGTGAGTGATGAAGAGTTTCTACAATTTGACACAACTGCAGTTCCTGTCATAGTTACTTTAACTAAGGTTGGGAGGCATTATATAGTGGATGCAACTTCAGAGGAGGAATCAGAAATGAGTTCAGCAGTTTCGGTTTCGGTCAACAGACAAGGACTGATTTGTGGGTTGACCAAAAGAGGTGGGGCCGGTTTGGATCCGAGTGTTGTACTTGATATGATATCGGTTGGAAAACATGTGAGTGAGCAGTTGATGAACAAATTGGATTCTGAAATTGCTGCAGCTGAAGCAACCATGGAAGAGGAGTGA	852	42.84	MVGLSVGEKHFIQGGIAQDLRTDGRKRLTYRPISVETGANGSARVKMGKTEVIASVKAELGRPNSSAPDKGKVSIYIDCSPTAAPQYEGRGGEELSMELSAALRQCLLGGKTGAGAGINLSSLSIVDGKVCWDLYIDGLVINIDGNILDALGAAIKAALSNTGIPKVNVASTAPSDEQPEVDVSDEEFLQFDTTAVPVIVTLTKVGRHYIVDATSEEESEMSSAVSVSVNRQGLICGLTKRGGAGLDPSVVLDMISVGKHVSEQLMNKLDSEIAAAEATMEEE	283

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lssa7g03306	283	Pfam	3' exoribonuclease family, domain 1	30	165	IPR001247	-
	Lssa7g03306	283	SUPERFAMILY	Ribosomal protein S5 domain 2-like	4	219	IPR020568	-
	Lssa7g03306	283	Pfam	3' exoribonuclease family, domain 2	196	259	IPR015847	-
	Lssa7g03306	283	SUPERFAMILY	Ribonuclease PH domain 2-like	192	277	IPR036345	-
	Lssa7g03306	283	CDD	RNase-PH-RRP42	4	271	-	-
	Lssa7g03306	283	FunFam	Exosome complex component RRP42	3	282	-	-
	Lssa7g03306	283	Gene3D	-	3	283	IPR027408	-
	Lssa7g03306	283	PANTHER	EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEIN	1	277	IPR050590	GO:0000176(PANTHER)\|GO:0000177(PANTHER)\|GO:0000467(PANTHER)\|GO:0016075(PANTHER)\|GO:0017091(PANTHER)\|GO:0034427(PANTHER)\|GO:0034473(PANTHER)\|GO:0034475(PANTHER)\|GO:0034476(PANTHER)\|GO:0043928(PANTHER)\|GO:0071028(PANTHER)\|GO:0071035(PANTHER)\|GO:0071038(PANTHER)\|GO:0071042(PANTHER)

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lssa7g03306	K12589	exosome complex component RRP42

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Lssa	Lssa-Chr7:175860446	Lssa9g04084	Lssa-Chr9:207498671	dispersed
	Lssa	Lssa-Chr7:175860446	Lssa2g00551	Lssa-Chr2:38982055	transposed
	Lssa	Lssa-Chr7:175860446	Lssa4g04179	Lssa-Chr4:233818690	transposed