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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lssa7g03309 ATGGCTACACAAATCAATCCCTGTTCTTCATCTTCCACCACCTTCTCACCGTCTTCACTTAATCAAAAAGCTTTTTCCTCTGCAAAATTCTTCAATTTCTCAAGAAAATCTTCTCCCTCCAGATGGGTTTTCAAGATTCACTCGAGAATCAGTCCGAAAAACCAGTTTGAACTCAAATCCTCAAATGGGTCTCCTCTTAATGCGATTTCTTTGCACGGTGGTGCAGCAGAGAAGCCTCTAGCGAAAGAACTCGTATCACCACCGGAACAATCTGAATCGAATCTTAGTGTCACTGTCGTCGGTGCTTCCGGCGATCTTGCCAAGAAAAAAATCTTTCCGGCGCTTTTTGCTCTCTTTTACGAGGATTGTTTACCTCAGAATTTTACTATATTTGGTTATGCTCGAACCAAAATGACTGATGAGGAGTTAAGAGAGATGATTAGTGGAACTTTAACTTGCAGAATCGATAAGAGAGAAAACTGTGGTGACAAAATGGAAAAGTTTCTTGAAAGATGTTTCTACCAATCGGGTCAATACAACTCTGAGGAACATTTTGCAGAATTGGACATTAAGTTGAAGCAGAAAGAGGGTGGAAAAGTATCGAATAGGTTGTTTTACTTGTCAATACCACCGGATATTTTTGTTGATGTGGCACGTTGTGCAAGTGTAAGGGCTTCTTCCAAGAATGGCTGGACAAGGGTAATTGTGGAAAAACCATTTGGTCGTGACTCAGAATCTTCTGGAGAGCTAACAAGAAGCCTCAAGAAGTACTTAGCCGAGGATCAAATCTTCAGGATTGATCATTACTTAGGGAAGGAGCTAGTGGAGAATTTATCGGTTCTTCGTTTCTCAAATCTTGTTTTTGAACCACTTTGGTCAAGAAACTACATTCGAAATGTACAATTCATATTTTCCGAAGACTTTGGCACAGAAGGGCGAGGAGGATACTTTGACAACTATGGAATCATCCGAGATATAATGCAAAACCACCTCCTACAAATACTAGCATTGTTTGCAATGGAAACACCCGTCACTTTGGATGCCGAAGACGTTAGAAACGAAAAGGTTAAAGTTTTGAGGTCGATGAGACGCCTACAGCTTGAAGATGTAATCGTGGGCCAATATAAAGGCCATAGCAAGGGTGCAAAGACGTATGCAGGGTACACAGATGACCCAACTGTGCCAAATGACAGTCTTACCCCAACTTTTGCAGCAGCAGCTCTCTTTATAGATAATGCCCGATGGGATGGTGTCCCATTTCTTATGAAAGCAGGAAAGGCCCTCAATACTAGAAGGGCGGAGATTAGAGTTCAATTCAGACATGTTCCAGGGAATCTATACAAACGAAACTTTGGGATGGATTTGGATAAGGCTACAAATGAGCTCGTGCTTCGTGTCCAGCCTGATGAAGCGATTTATCTCAAGATTAATAATAAGATTCCTGGTCTTGGAATGAGATTTGACCGGAGTGATCTTAATTTGCTCTACAGCGCAAGGTATCCGAAGGAAATTCCGGATGCATATGAGAGGCTTCTGTTGGATGCGATTGAAGGAGAAAGGAGATTGTTTATAAGAAGCGATGAACTTGATGCTGCTTGGGCTATATTTACGCCTTTGCTGAAAGAACTGGAGGCGAAGAAGATCTCACCGGAGTTGTATCCTTATGGCAGCAGAGGACCCGTCGGCGCTCATTATTTGGCGGCAAAATATGATGTCCGGTGGGGAGATCTCGCCGGAGATGACTGA 1746 42.61 MATQINPCSSSSTTFSPSSLNQKAFSSAKFFNFSRKSSPSRWVFKIHSRISPKNQFELKSSNGSPLNAISLHGGAAEKPLAKELVSPPEQSESNLSVTVVGASGDLAKKKIFPALFALFYEDCLPQNFTIFGYARTKMTDEELREMISGTLTCRIDKRENCGDKMEKFLERCFYQSGQYNSEEHFAELDIKLKQKEGGKVSNRLFYLSIPPDIFVDVARCASVRASSKNGWTRVIVEKPFGRDSESSGELTRSLKKYLAEDQIFRIDHYLGKELVENLSVLRFSNLVFEPLWSRNYIRNVQFIFSEDFGTEGRGGYFDNYGIIRDIMQNHLLQILALFAMETPVTLDAEDVRNEKVKVLRSMRRLQLEDVIVGQYKGHSKGAKTYAGYTDDPTVPNDSLTPTFAAAALFIDNARWDGVPFLMKAGKALNTRRAEIRVQFRHVPGNLYKRNFGMDLDKATNELVLRVQPDEAIYLKINNKIPGLGMRFDRSDLNLLYSARYPKEIPDAYERLLLDAIEGERRLFIRSDELDAAWAIFTPLLKELEAKKISPELYPYGSRGPVGAHYLAAKYDVRWGDLAGDD 581
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lssa7g03309 581 Gene3D Dihydrodipicolinate Reductase; domain 2 266 575 - -
Lssa7g03309 581 FunFam Glucose-6-phosphate 1-dehydrogenase 91 265 - -
Lssa7g03309 581 Coils Coil 348 368 - -
Lssa7g03309 581 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 267 574 - -
Lssa7g03309 581 Gene3D - 90 265 - -
Lssa7g03309 581 PANTHER GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE G6PD 91 573 IPR001282 GO:0004345(PANTHER)|GO:0006006(PANTHER)|GO:0006006(InterPro)|GO:0009051(PANTHER)|GO:0009570(PANTHER)|GO:0016614(InterPro)|GO:0050661(InterPro)
Lssa7g03309 581 Hamap Glucose-6-phosphate 1-dehydrogenase [zwf]. 94 576 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Lssa7g03309 581 PRINTS Glucose-6-phosphate dehydrogenase signature 327 343 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Lssa7g03309 581 PRINTS Glucose-6-phosphate dehydrogenase signature 257 285 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Lssa7g03309 581 PRINTS Glucose-6-phosphate dehydrogenase signature 309 326 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Lssa7g03309 581 PRINTS Glucose-6-phosphate dehydrogenase signature 233 246 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Lssa7g03309 581 PRINTS Glucose-6-phosphate dehydrogenase signature 414 440 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Lssa7g03309 581 Pfam Glucose-6-phosphate dehydrogenase, C-terminal domain 280 574 IPR022675 GO:0004345(InterPro)|GO:0006006(InterPro)|GO:0050661(InterPro)
Lssa7g03309 581 PIRSF G6PD 81 578 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Lssa7g03309 581 NCBIfam glucose-6-phosphate dehydrogenase 95 575 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Lssa7g03309 581 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 91 280 IPR036291 -
Lssa7g03309 581 ProSitePatterns Glucose-6-phosphate dehydrogenase active site. 267 273 IPR019796 GO:0004345(InterPro)|GO:0006006(InterPro)
Lssa7g03309 581 Pfam Glucose-6-phosphate dehydrogenase, NAD binding domain 99 277 IPR022674 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Lssa7g03309 581 FunFam Glucose-6-phosphate 1-dehydrogenase 266 575 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lssa7g03309 K00036 glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lssa Lssa-Chr3:204966527 Lssa7g03309 Lssa-Chr7:176427763 dispersed
Lssa Lssa-Chr4:2669504 Lssa7g03309 Lssa-Chr7:176427763 dispersed