AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lssa7g03319 | ATGTCATCTAGATCGACTAGCAGAACCCATTGTTCGAGGAGCAGTTCTTCACGATTGAAACGCGATGCTCGTGTGGTTTCGCAAACCCCAATTGACGCAAAGCTTCATGGCGACTTCGAAGAATCCGAAAGACTGTTTGACTACTCTACTTCCATTGACGTCAATGCATCAACTTCAACCAGCAATGTCCCTTCATCGACTGTATCAGCTTACCTTCTGAAAATGCAAAGAGGAAGTCAAATTCAGCCTTTCGGATGCATGATTGCAGTCGATGAACAAACCTTAACCGTGTTAGCCTACAGTGAAAACGCCCTCGAGATGTTGGATTTAGCTCCACATGCAGTTCCAAACATCGAACAACAAGAAGCTTTAACTTTTGGAACAGATGTCCGTACCCTCTTTAGATCTTCAAGCGCATCCGCTCTTCAAAAAGCAGCGAACTTTCCAGAAATTAACCTTCTCAATCCTATATTAGTTCATTGCAGGAGTTCAGGTAAACCATTTTATGCAATTTTACATAGAAACGATGTGGGATTGATCATAGATTTGGAGCCTGTGAATCCCGCTGATGTCCCTGTAACAGCTGCTGGAGCTTTAAAGTCTTATAAGCTTGCAGCTAAAGCGATTTCAAGATTACAATCTTTACAAAGTGGGAATATATCCCGAATGTGTGATGTTTTGGTTCGTGAAGTGAGTGAGTTGACTGGGTATGACCGGGTTATGGTTTACAAATTTCATGAAGATGAACATGGTGAAGTTATTGCAGAGTGTCGAAAGCCTGATCTTGAACCTTATCTTGGGTTACATTACCCTGCTACTGATATCCCTCAAGCTTCAAGATTTCTTTTTATGAAAAACAAAGTTAGAATGATTTGTGATTGTTTAGCTCAATCTGTGAAGGTGGTTCAAACCAAGAATTTACCTCAGCCTTTGAGTCTTTCAGGGTCTGCTTTGAGAGCTCCTCATGGATGTCATTCACAATACATGGCAAACATGGGGTCGATTGCTTCTCTTGTGATGTCTGTCACCATTAGTGATGGTGATTATGATGATGAAGAAGATGATGAAAACGAATCCGAAAGTGGGATAAATCAGCAAAAAGAAGAAAAGGGAAAAAGATTATGGGGTTTAGTTGTTTGTCATCATTCAACTGCTCGATTCGTCCCATTCCCTTTGAGGTACGCGTGTGAGTTTTTGATTCAAGTTTTCGGTGTTCAAATAAACAAAGAAGTCGAATTAGCTGCTCAATTACAAGAAAAACACATCTTGAAGACACAAACTGTACTTTGTGACATGCTTCTAAGAGAAGCACCAATTGGAATCATGACACAATCACCTAATGTCATGGATCTTGTTACATGTGATGGTGCTGCTCTTTACTACAAAAACAAGTTTTGGTTGTTGGGAATCACTCCTAAAGAATCACAAATTAAAGATATAGCACATTGGCTTCTTCAAGAACATGAAGGGGGGACAGGGTTAAGTACAGATAGTCTCATGGATGCTGGATACCCGAATGCTTTAGTTTTAGGAAAAGCGGTTTGTGGAATGGCTGCTATCAAGATTACTTCAAAAGATTTTCTTTTTTGGTTTCGATCCCACACTGCAAAAGAAGTGAAATGGGGAGGTGCAAAACACTATCCGGAGGATAAAGATGATGGAAGAAAAATGCATCCGAGGTCATCATTCAAGGCGTTTTTGGAAGTTGTCAAGAATAGGAGTTCACCATGGGAAGATGTGGAAATGGATGCCATTCATTCTTTACAATTGATTTTGAGAGGATCTTTACAAGATGATGAGGACAAGCGTGGTGGTGGTGGTGATGATGATGATGATAATGATAAGAAGATTGTGAGTGTTCCAACCGTTGGATCGAGCATACAAAGGGTTGATGAACTGCGTGTTGTGACTAATGAAATGGTTAGGTTGATTGAAACCGCTTTGGTTCCTATATTTTCGGTTGATGGGTATGGAAATATTAGCGGGTGGAATGATAAAATAGCCGAAATTACCGGATTGCCATTGGACCAAGCGGTTGGTGTCCCGTTGGTCAACTTGGTTGTCAGTGATTCGATTGATAAAGTCAAAGTCATGCTTTCATCCGCCTTACAAGGCATCGAGGAGAAAAATCTTGAAATCAAACTAAAATGTTTCGGTAGCCAAGAAAAAAATGACCATATTACCCTCATTACTAACGCGTGTTGTAGCCGTGATTTGAATGAAGCGATAGTGGCGGTAAGCTTTGTGGGACAAGATTTAACGGCTCAAAAGTTAATCACGGATAAATACACAAAAATGAAGGCGATTATTCTAGTATTATCCGTAGCCCGTGTCCACTTATTCCACCAATTTTCATGA | 2358 | 40.46 | MSSRSTSRTHCSRSSSSRLKRDARVVSQTPIDAKLHGDFEESERLFDYSTSIDVNASTSTSNVPSSTVSAYLLKMQRGSQIQPFGCMIAVDEQTLTVLAYSENALEMLDLAPHAVPNIEQQEALTFGTDVRTLFRSSSASALQKAANFPEINLLNPILVHCRSSGKPFYAILHRNDVGLIIDLEPVNPADVPVTAAGALKSYKLAAKAISRLQSLQSGNISRMCDVLVREVSELTGYDRVMVYKFHEDEHGEVIAECRKPDLEPYLGLHYPATDIPQASRFLFMKNKVRMICDCLAQSVKVVQTKNLPQPLSLSGSALRAPHGCHSQYMANMGSIASLVMSVTISDGDYDDEEDDENESESGINQQKEEKGKRLWGLVVCHHSTARFVPFPLRYACEFLIQVFGVQINKEVELAAQLQEKHILKTQTVLCDMLLREAPIGIMTQSPNVMDLVTCDGAALYYKNKFWLLGITPKESQIKDIAHWLLQEHEGGTGLSTDSLMDAGYPNALVLGKAVCGMAAIKITSKDFLFWFRSHTAKEVKWGGAKHYPEDKDDGRKMHPRSSFKAFLEVVKNRSSPWEDVEMDAIHSLQLILRGSLQDDEDKRGGGGDDDDDNDKKIVSVPTVGSSIQRVDELRVVTNEMVRLIETALVPIFSVDGYGNISGWNDKIAEITGLPLDQAVGVPLVNLVVSDSIDKVKVMLSSALQGIEEKNLEIKLKCFGSQEKNDHITLITNACCSRDLNEAIVAVSFVGQDLTAQKLITDKYTKMKAIILVLSVARVHLFHQFS | 785 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lssa7g03319 | 785 | PANTHER | OS08G0260000 PROTEIN | 1 | 725 | - | - | |
| Lssa7g03319 | 785 | ProSiteProfiles | Phytochrome chromophore attachment site domain profile. | 219 | 401 | IPR016132 | - | |
| Lssa7g03319 | 785 | Pfam | PAS fold | 639 | 752 | IPR013767 | GO:0006355(InterPro) | |
| Lssa7g03319 | 785 | SMART | gaf-1 | 219 | 421 | IPR003018 | GO:0005515(InterPro) | |
| Lssa7g03319 | 785 | CDD | PAS | 649 | 715 | IPR000014 | - | |
| Lssa7g03319 | 785 | PRINTS | Phytochrome signature | 134 | 156 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Lssa7g03319 | 785 | PRINTS | Phytochrome signature | 526 | 545 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Lssa7g03319 | 785 | PRINTS | Phytochrome signature | 559 | 577 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Lssa7g03319 | 785 | PRINTS | Phytochrome signature | 639 | 655 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Lssa7g03319 | 785 | PRINTS | Phytochrome signature | 731 | 748 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Lssa7g03319 | 785 | PRINTS | Phytochrome signature | 751 | 771 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Lssa7g03319 | 785 | PRINTS | Phytochrome signature | 441 | 461 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Lssa7g03319 | 785 | PRINTS | Phytochrome signature | 234 | 253 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Lssa7g03319 | 785 | PRINTS | Phytochrome signature | 319 | 340 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Lssa7g03319 | 785 | PRINTS | Phytochrome signature | 658 | 673 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Lssa7g03319 | 785 | Gene3D | PAS domain | 78 | 322 | - | - | |
| Lssa7g03319 | 785 | Pfam | Phytochrome region | 424 | 598 | IPR013515 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Lssa7g03319 | 785 | NCBIfam | PAS domain S-box protein | 643 | 757 | IPR000014 | - | |
| Lssa7g03319 | 785 | Gene3D | - | 416 | 589 | IPR043150 | - | |
| Lssa7g03319 | 785 | SUPERFAMILY | GAF domain-like | 419 | 597 | - | - | |
| Lssa7g03319 | 785 | SUPERFAMILY | GAF domain-like | 199 | 408 | - | - | |
| Lssa7g03319 | 785 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
| Lssa7g03319 | 785 | MobiDBLite | consensus disorder prediction | 347 | 367 | - | - | |
| Lssa7g03319 | 785 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 627 | 721 | IPR035965 | - | |
| Lssa7g03319 | 785 | ProSitePatterns | Phytochrome chromophore attachment site signature. | 319 | 328 | IPR013516 | - | |
| Lssa7g03319 | 785 | ProSiteProfiles | PAS repeat profile. | 636 | 706 | IPR000014 | - | |
| Lssa7g03319 | 785 | Gene3D | PAS domain | 627 | 768 | - | - | |
| Lssa7g03319 | 785 | Pfam | GAF domain | 221 | 410 | IPR003018 | GO:0005515(InterPro) | |
| Lssa7g03319 | 785 | MobiDBLite | consensus disorder prediction | 597 | 617 | - | - | |
| Lssa7g03319 | 785 | Pfam | PAS fold | 71 | 186 | IPR013654 | GO:0006355(InterPro) | |
| Lssa7g03319 | 785 | SMART | pas-2 | 638 | 704 | IPR000014 | - | |
| Lssa7g03319 | 785 | FunFam | Phytochrome | 416 | 545 | - | - | |
| Lssa7g03319 | 785 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 75 | 188 | IPR035965 | - | |
| Lssa7g03319 | 785 | Gene3D | - | 200 | 572 | IPR029016 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lssa7g03319 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Lssa | Lssa-Chr7:176809347 | Lssa9g03097 | Lssa-Chr9:149954484 | dispersed |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Lssa9g03097 | . | 1 | 1120 | Histidine Kinase gene family | AT1G09570 | 74.933 | 0.0 | 1789.0 | |
| Lssa9g00074 | . | 3 | 1121 | Histidine Kinase gene family | AT2G47430 | 34.642 | 0.0 | 578.0 | |
| Lssa9g00230 | . | 181 | 252 | Histidine Kinase gene family | AT2G01830 | 70.833 | 3.37e-28 | 107.0 | |
| Lssa8g01335 | ACH | 98 | 1056 | Histidine Kinase gene family | AT2G01830 | 68.308 | 0.0 | 1321.0 | |
| Lssa7g01153 | . | 5 | 1096 | Histidine Kinase gene family | AT4G18130 | 59.712 | 0.0 | 1380.0 | |
| Lssa7g03319 | . | 3 | 736 | Histidine Kinase gene family | AT5G35840 | 62.5 | 0.0 | 1021.0 | |
| Lssa7g01152 | . | 5 | 1096 | Histidine Kinase gene family | AT4G18130 | 58.477 | 0.0 | 1352.0 | |
| Lssa5g01904 | ACH | 5 | 921 | Histidine Kinase gene family | AT5G10720 | 57.203 | 0.0 | 1036.0 | |
| Lssa4g00824 | ACH | 106 | 1049 | Histidine Kinase gene family | AT2G01830 | 67.302 | 0.0 | 1258.0 | |
| Lssa3g02507 | ACH | 28 | 931 | Histidine Kinase gene family | AT2G17820 | 64.004 | 0.0 | 1199.0 | |
| Lssa3g04088 | . | 5 | 616 | Histidine Kinase gene family | AT5G10720 | 64.687 | 0.0 | 783.0 | |
| Lssa3g04821 | . | 3 | 1121 | Histidine Kinase gene family | AT2G47430 | 35.33 | 0.0 | 595.0 | |
| Lssa3g00851 | ACH | 1 | 921 | Histidine Kinase gene family | AT5G10720 | 57.622 | 0.0 | 1041.0 | |
| Lssa2g02396 | ACH | 27 | 1196 | Histidine Kinase gene family | AT2G17820 | 63.345 | 0.0 | 1471.0 | |
| Lssa1g04001 | . | 746 | 1114 | Histidine Kinase gene family | AT2G47430 | 31.646 | 1.02e-44 | 162.0 | |
| Lssa1g01552 | . | 36 | 1153 | Histidine Kinase gene family | AT2G18790 | 75.714 | 0.0 | 1778.0 |