AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lssa7g03329 ATGACGATTTCCGGCGACGGAAAGGTAATCTACAACCTTGACTACCGATCGAAGAACGACGATGCGTGGTACACCTCTGGCGTCGTTCTCGAAAATGGAAAGCGGCTGCGCGTCAAGCTCGAGGATTTCAAGTCAGGCGACGCTGATGAGGTATTCTCTATGGGTAATTTCTCCAAACACGATGAACTGGAAGAATTTCTCCGTCGATTTCGTCCGGTGTCCGTGCCGGTCGAGGAGAACGAGTGCTCCACAGTGGTCGAAGGCATGACGGTGTGTGCTACTTATAAAGGCGATGGATCAGTTCGATACTTCGACGCCATTGTTGATGGTGTTTGCTACAAAGAGCACAAACCTGAGAAGTGCGTATGCACTTATTTACTATGCTGGAAACATGGCCCTGGTGAAGGCACAGTAACTGCAGAAAATATTGTTGATGTATGCTTCATTAAGTCTGGTGCCCCTGATCCCAGAGTTACTGACTTTGCAAAGCTTGTGATGGAAAAACTCTCTTCTCAATCCAGTCTCATACCCAAGACTCCATTTCTGTCCAGAAAAACAAGCTCAAACCAAACTTTTAACAAGTTACAGGAATTCAGTGGTGATGGAGACAGTTGTTTTAGTGGATTCTCTGAAGAGAAGGGAAGATTCAAGACTGAACTAATTGATCAGGACAGAGACATGGGAGGTGTCAAAGAAACTGAATCTCATCATTTCATAATATTAGAGAATCTGGAGAAAGATCTATCTCCAGTCTTGATGAAAGACTTCATATATGAACAAACTTCAATCCCAACACACACTTATGTTTTTCAAAGTCTGTCAAATGAACCATATGCAAGAGGAATAATTATTGTGGATAGCAAACAAAAGCTGAAGAGGATACATGAATTTATAAGCAATCCAAATCACTTTATTGTATCTACTTTTTCTGGAAGGCCATGGGTTATAGCTGAAGACATGCTTAGAGCTGAAACTTTCAACATAATGCAGATCCTGCAGCCAAAGTCTGAGAACAAAAACACAGGAAACAAGTTAATGGTGGTGCATTTGGGAACAAAAGAATATATGAGAGCTAAAAAATCAAAAGATCTATATATGGAATTCCGGAATCATGTAAATAGACTTGTGAAGAGGTTAGATATGGAGGAGAAGAAGAAATGGCGTTCATCCAGTACAAACTAG 1182 41.46 MTISGDGKVIYNLDYRSKNDDAWYTSGVVLENGKRLRVKLEDFKSGDADEVFSMGNFSKHDELEEFLRRFRPVSVPVEENECSTVVEGMTVCATYKGDGSVRYFDAIVDGVCYKEHKPEKCVCTYLLCWKHGPGEGTVTAENIVDVCFIKSGAPDPRVTDFAKLVMEKLSSQSSLIPKTPFLSRKTSSNQTFNKLQEFSGDGDSCFSGFSEEKGRFKTELIDQDRDMGGVKETESHHFIILENLEKDLSPVLMKDFIYEQTSIPTHTYVFQSLSNEPYARGIIIVDSKQKLKRIHEFISNPNHFIVSTFSGRPWVIAEDMLRAETFNIMQILQPKSENKNTGNKLMVVHLGTKEYMRAKKSKDLYMEFRNHVNRLVKRLDMEEKKKWRSSSTN 393
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lssa7g03329 393 Pfam SAWADEE domain 11 147 IPR032001 GO:0003682(InterPro)
Lssa7g03329 393 Gene3D - 77 147 - -
Lssa7g03329 393 PANTHER SAWADEE PROTEIN 9 385 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lssa7g03329 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lssa Lssa-Chr7:177158481 Lssa9g02408 Lssa-Chr9:86580927 dispersed
Lssa Lssa-Chr7:177158481 Lssa7g03330 Lssa-Chr7:177187464 tandem