Gene detail

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lssa7g03349	ATGGAGGGTTTAGCATCTTCTAGGGTCCGGTTCGATTTTCATTCATTGCTTAACAGCAGCTACACACAGAACCCTAGCTCTAGATCTAATTTCCATAAATTGATTTCATTTCCGTCAGCCCCAATCGATGGTCGCAGAACTACTAATTCATGTGTTCGATCGCGATCGATGAATCAACTAAAGTCTGGGACGCTGGTCGGGTCTTCAGTTGTCGATCCGTCGAGTGAATCGATACTCGATGAACTCAAAAGTAAAGAGTGGGAAATTGGGGCTTTAAAAGACGAATTAGCTGCTACACAGGGCATTCGGATAAGAAGACGACCACCAACAAATCCTCCTTTGCATTATGTTGGTCCTTTTGAGTTCCATTTACAGAATGAAGGAATTACGCCTCGTAATATACTAGAGGAAATTGTATGGAACAAAGATGTAGAGGTTACTCAGATGAAAGAGAAACATACAATATATTCACTGAAGAAAGCTCTTGAAAGTGTTCATCCTCCCAGAGACTTTATAGGAGCTCTGAAGGCTTCATATCAACGAACAGGGTTTCCTGGTTTAATTGCTGAAGTGAAAAAGGCTTCACCAAGTAGAGGAGTTTTAAGGGAGGATTTTGATCCAGTTGAAGTTGCAAAAGCTTATGAGAAAGGTGGAGCAGCATGCCTTAGTGTCTTAACTGATTCAAAATATTTTCAGGGAAGCTTTGAGAATCTAGAGGCAATAAGGAATGCTGGTGTTCAGTGTCCTCTTTTATGCAAAGAATTCATTGTGGATGCATGGCAACTTTACTATGCTAGAACAAAAGGTGCAGATGCTGTTTTGTTGATTGCAGCTGTTTTACCAGATCTTGATATTAAATATATGATCCAAATATGCAAAATGATCGGACTCACAGCTCTTGTTGAGGTACATGATGAGATTGAAATGGATCGCATGTTGGCAATTGATGGAATTGAACTCATTGGTATCAACAATCGTAACCTTGAAACATTCAAAGTTGATATTAGTAACACAAAGAGGTTGCTTGAAGGTGAACGTGGGGAAAAGATTCGGCAGAAAGATATAATAGTGGTGGGGGAGAGTGGATTGTTCACACCTGCTGATATTGCCTATGTGCAAGAAGCTGGTGTAAAAGCTATATTGGTGGGGGAGTCGATTGTGAAGCAGAAAGATCCAACACAAGGAATTAGACAACTTTTTGGAAAAGATATATCACACCCTTAA	1224	40.2	MEGLASSRVRFDFHSLLNSSYTQNPSSRSNFHKLISFPSAPIDGRRTTNSCVRSRSMNQLKSGTLVGSSVVDPSSESILDELKSKEWEIGALKDELAATQGIRIRRRPPTNPPLHYVGPFEFHLQNEGITPRNILEEIVWNKDVEVTQMKEKHTIYSLKKALESVHPPRDFIGALKASYQRTGFPGLIAEVKKASPSRGVLREDFDPVEVAKAYEKGGAACLSVLTDSKYFQGSFENLEAIRNAGVQCPLLCKEFIVDAWQLYYARTKGADAVLLIAAVLPDLDIKYMIQICKMIGLTALVEVHDEIEMDRMLAIDGIELIGINNRNLETFKVDISNTKRLLEGERGEKIRQKDIIVVGESGLFTPADIAYVQEAGVKAILVGESIVKQKDPTQGIRQLFGKDISHP	407

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lssa7g03349	407	Pfam	Indole-3-glycerol phosphate synthase	135	399	IPR013798	GO:0004425(InterPro)
	Lssa7g03349	407	CDD	IGPS	171	399	IPR013798	GO:0004425(InterPro)
	Lssa7g03349	407	PANTHER	TRYPTOPHAN BIOSYNTHESIS PROTEIN	75	405	IPR045186	GO:0000162(PANTHER)\|GO:0004425(PANTHER)\|GO:0004425(InterPro)\|GO:0004640(PANTHER)
	Lssa7g03349	407	Hamap	Indole-3-glycerol phosphate synthase [trpC].	133	401	IPR013798	GO:0004425(InterPro)
	Lssa7g03349	407	SUPERFAMILY	Ribulose-phoshate binding barrel	142	401	IPR011060	-
	Lssa7g03349	407	FunFam	Indole-3-glycerol phosphate synthase chloroplastic	127	405	-	-
	Lssa7g03349	407	ProSitePatterns	Indole-3-glycerol phosphate synthase signature.	187	205	IPR001468	GO:0004425(InterPro)\|GO:0006568(InterPro)
	Lssa7g03349	407	Gene3D	Aldolase class I	127	406	IPR013785	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lssa7g03349	K01609	indole-3-glycerol phosphate synthase [EC:4.1.1.48]

Event-related genes

Select	Gene_1	Gene_2	Event_name
	127481	Lssa5g03768	Lssa7g03349

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Lssa	Lssa-Chr5:272396037	Lssa7g03349	Lssa-Chr7:177599032	wgd