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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lssa7g03384 ATGGCAAAGCAAAAGATTGTGGTGAAGGTCACAATGAACAACGAAAAGAAAATCCGTAAGGCTCTGAAAATCGCAGTTAGTCTCTCCGGTGTGGAATCAGCATCTTTCGTTGGATCAGATAAAACCCAAATCGCTGTAACAGGGGAAGATGTTGACTCAGTTGAACTGACGACCTTGCTAAGGAAAGGTGTTGGATACACAGAGCTACTGAGTGTTGGTCCGGTGGAGGAGAAGAAACCAGCCGCCGAAAAGGAAACAAATCCCACGGTGGCGTCACTAAATTTTACAGTTAATCCATACCAATACTACTACGGCAGCTATGGGATGCCTTACTATGCATATTAG 345 44.64 MAKQKIVVKVTMNNEKKIRKALKIAVSLSGVESASFVGSDKTQIAVTGEDVDSVELTTLLRKGVGYTELLSVGPVEEKKPAAEKETNPTVASLNFTVNPYQYYYGSYGMPYYAY 114
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lssa7g03384 114 ProSiteProfiles Heavy-metal-associated domain profile. 3 72 IPR006121 GO:0046872(InterPro)
Lssa7g03384 114 PANTHER OS04G0464100 PROTEIN 4 87 IPR044296 -
Lssa7g03384 114 Gene3D - 1 78 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lssa7g03384 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lssa Lssa-Chr7:178680476 Lssa7g03387 Lssa-Chr7:178717253 dispersed
Lssa Lssa-Chr7:178601970 Lssa7g03384 Lssa-Chr7:178680476 tandem