AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lssa7g03409 | ATGTTTCGCGTTTTGAAGAACTTCCCTCTCAAAGGCGTCACCAACTGTCGATGGATGACCACCACCACCGTAATGAGTTTCGGAGACGGTAGCCATGGTGCTCTTGGCTTACCAATCTCCGTCACCGGAATCAATTCCGACGCCTACGAACCCACTCCAATCTCAGCCCTACCTCCCGATGTTTCCAGCATCGCCGCCGGTCACTACCACTCTCTCGCCGTTACTTCCCAAGGCCACCTCTGGTCTTGGGGTCGCAATGCCGAATCACAACTTGGTCGGAACCTTGATTCCCCTAGAGAAACATGGATTGAACCAAAAAGAATAGATGGATTAAGTGATGTAAAATCTGCATTTGCCTCTGGTGTTGTTTCTGCAGCTATTGGAATCGACGGGTGTATATGGATTTGGGGGAAATCAAAACGGGGTCAATTAGGTCTTGGAATCGGAATCACAGAAGCCATTCATCCAACCAAAATAAAAGCTCTTTCAAAAGAAGAGATAATTAAGGTGTCATTTGGATGGGGACACGCTCTTGCACTTACTAAAGATGGAAAGTTATTCGGTTGGGGTTATTCAGCTGATGGTAGATTAGGAAAGAGAGAAATTACAGGTGTGTCCCCACTCGATTCTGTAAACAATTTGTCAAAGCTTGAAGATGCTGAAAAAGTAGTATTGGAAGCTATGAGTAAAGAGAATGATATGCCTATCATATGGGAGCCATGTTTGATTAATGAATTAAAAGGTGTTGAAGTTGCTGACGTGTCATGTGGACTTGACCACACCTTGGTTCTTTTACGTGATGGAACTTTATTAAGTGGTGGAAGCAATGTATATGGGCAATTGGGAAGATCAACTCAAGATTTGGAGTTTCTTCCTGTTGACATAAGTGTCCACCCTGTTTCAATTTCTTCAGGGCTAGGGCATTCTTTAGCTATATGCCAGATTCCATCTGCAGAAGGTGGTGAAGGTATCTCAGGAGTGTTTTCATGGGGTTGGGGGCAAAATTGTCAACTTGGAAGAGAAGGTCCAGGGAATATTCCGTTGCTTGTGGATGGGCTTTTAGGGGAAAAGCCCGTATCAGTGTCGGGTGGGCGGGTCCACTCCATTGTCCTCACGGATAATGGAGAGGTTTTTTCTTGGGGGTGTGGGAGAAGTGGGAGGCTTGGGTTGGGTAGTTCCATTGATGAACATGAACCAATGGTGGTTGAGTTTTCAGAAGATACAAATGTTTTGCAAGTTGTTTCAGGGTTTGATCATAATTTGGTCTTAACTAGTTGA | 1278 | 44.84 | MFRVLKNFPLKGVTNCRWMTTTTVMSFGDGSHGALGLPISVTGINSDAYEPTPISALPPDVSSIAAGHYHSLAVTSQGHLWSWGRNAESQLGRNLDSPRETWIEPKRIDGLSDVKSAFASGVVSAAIGIDGCIWIWGKSKRGQLGLGIGITEAIHPTKIKALSKEEIIKVSFGWGHALALTKDGKLFGWGYSADGRLGKREITGVSPLDSVNNLSKLEDAEKVVLEAMSKENDMPIIWEPCLINELKGVEVADVSCGLDHTLVLLRDGTLLSGGSNVYGQLGRSTQDLEFLPVDISVHPVSISSGLGHSLAICQIPSAEGGEGISGVFSWGWGQNCQLGREGPGNIPLLVDGLLGEKPVSVSGGRVHSIVLTDNGEVFSWGCGRSGRLGLGSSIDEHEPMVVEFSEDTNVLQVVSGFDHNLVLTS | 425 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lssa7g03409 | 425 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 61 | 90 | - | - | |
| Lssa7g03409 | 425 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 251 | 280 | - | - | |
| Lssa7g03409 | 425 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 131 | 183 | IPR000408 | - | |
| Lssa7g03409 | 425 | Gene3D | - | 226 | 425 | IPR009091 | - | |
| Lssa7g03409 | 425 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 22 | 77 | IPR000408 | - | |
| Lssa7g03409 | 425 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 325 | 374 | IPR000408 | - | |
| Lssa7g03409 | 425 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 327 | 371 | IPR000408 | - | |
| Lssa7g03409 | 425 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 130 | 180 | IPR000408 | - | |
| Lssa7g03409 | 425 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 374 | 423 | IPR000408 | - | |
| Lssa7g03409 | 425 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 268 | 315 | IPR000408 | - | |
| Lssa7g03409 | 425 | PRINTS | Chromosome condensation regulator RCC1 signature | 80 | 96 | IPR000408 | - | |
| Lssa7g03409 | 425 | PRINTS | Chromosome condensation regulator RCC1 signature | 23 | 39 | IPR000408 | - | |
| Lssa7g03409 | 425 | PRINTS | Chromosome condensation regulator RCC1 signature | 170 | 186 | IPR000408 | - | |
| Lssa7g03409 | 425 | PRINTS | Chromosome condensation regulator RCC1 signature | 61 | 74 | IPR000408 | - | |
| Lssa7g03409 | 425 | PRINTS | Chromosome condensation regulator RCC1 signature | 131 | 147 | IPR000408 | - | |
| Lssa7g03409 | 425 | PRINTS | Chromosome condensation regulator RCC1 signature | 370 | 391 | IPR000408 | - | |
| Lssa7g03409 | 425 | PRINTS | Chromosome condensation regulator RCC1 signature | 186 | 200 | IPR000408 | - | |
| Lssa7g03409 | 425 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 78 | 130 | IPR000408 | - | |
| Lssa7g03409 | 425 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 375 | 425 | IPR000408 | - | |
| Lssa7g03409 | 425 | SUPERFAMILY | RCC1-BLIP-II | 15 | 339 | IPR009091 | - | |
| Lssa7g03409 | 425 | Gene3D | - | 12 | 225 | IPR009091 | - | |
| Lssa7g03409 | 425 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 254 | 264 | IPR000408 | - | |
| Lssa7g03409 | 425 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 64 | 74 | IPR000408 | - | |
| Lssa7g03409 | 425 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 22 | 424 | IPR051210 | - | |
| Lssa7g03409 | 425 | SUPERFAMILY | RCC1-BLIP-II | 327 | 424 | IPR009091 | - | |
| Lssa7g03409 | 425 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 184 | 267 | IPR000408 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lssa7g03409 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Lssa | Lssa-Chr7:179267805 | Lssa6g00818 | Lssa-Chr6:31932033 | transposed |