Gene detail

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lssa7g03412	ATGAGGGAAGAAGGAATTAGCTCATCGGGGGACCCATTCCTTTCCCCGAATTCTCCTCATCCTCCTCTTCCCCCTCCTCCTACCGCTGCTGCAAGTTCGGCTGGGGCATCATCACCAGCTGTTGCCATCAATGGTGGAAGTACAGATTGGTTGGGTCATGGTCAGGGATCCAAAGCAGGTTCTTTATCTCGCATTAGTTCACAGCCCATGTGGATCTCATTGAGCACAAGTGCTCATGGTTCAGCTCTTGGCTCCTCTCAACCTTCATGTAGACCATGGGAAAGGGGTGATCTTTTAAGAAGATTGTCCACATTCAGACCTGCAAATTGGTTTGGAAAACCAAAGACTGCTAGTTCACTTGCCTGTGCTAGGAGAGGTTGGGTGAATGTGGATGTTGATAAAATTCAATGCGAGTCTTGTGGTGCAAACTTGAAATATAATGCACCAGATTCCATTTCTACCCCTTGTGATGAAGATTTTAGCAATCAACTTGATGAAGGACACAATGTCACTTGTCCATGGAGAGGAAATAGCTGTTCTGAAAGCTTAGTCCAATTCCCTCCTACCCCTCCATCAGCTTTAGTAGGAGGTTACAAAGACCGCTGTGATGGACTCCTTCAATTTCCATTTCTACCCCTTGTGGCCACTTCAGCACTTGACCAAATGAAGGTTTCAAGAGGTCCAGAAATCGATCGGTTTCTTCTTCAATCTGATATGGAAAACACCAAAGACGTTTTATGCATATATTCACGTGCACAGAAGTTGATAAGCCTTTGTGGGTGGGAGCCAAGGTGGCTTCCAAATGTACAAGACTGTGAAGAACATTCTGCTCAATCAGCTAAAAATGGTGCTTCTTTTAATCCTAATAAACATCATAACCCTAACAAGAAAACAATATCTGAAGATTCTTCAAAGAAGGAAACTAGATCCCCCTTATTGGATTGCAGCTTATGTGGGGCCACAGTAAGAATCTTGGACTTCATTCATGTAAATCGTCCTTCCCGTTTTGCCCCTAACAACATCGATGTCCCTGAAGCAAGTAAAAAGATTGTAATCACACGTGGAATAAGTGCAGCAAGTGGAATCAGTGGATGGGTTGAAGCTGAACAACAAACAGAAGACATTGATGAAGCTGCAACTACAGGAATGGATTTAAATCTTACAATGGGAAGTGGATTATCTCAAAAAAGACCCTTATCAGACTTATACCAAGACCCAAATCTCGGGCAGGCTGCGGGCAGCGAGGTTGGGGGTCGGGCAGCTTCGTATGAATCCCGGGGTCCAAACAAAAGAAATGTAGATGAAGGTGGGAGTACAGTGGATAGGCCACAGGGGATTATTCCCCATACAGATAGCATTGAAGGTGTTGTCATTGATCGTGATGCTGATGAAGTCAACGATAGTAAACGGGCACGTGGGTCCGGGTCTTACAAACGGGACTACTCATCTGGTGCGGGTCCCAGCCGGGTTTCGTATTTTGATATTGACAGAAATGCCCTTCCTCCTTCCAATAAAGATTCAGCAAGAGCTTCATCTGTTATAGCAATGGACACTTTTTGTCATAGTGATGATGATAATGACTCAATGGAGAGTGTTGAAAATCATCCTGGATATGTAGGAGGAGATGAGGTTAATTACCCTTCGGTGTCCGGTGTTAAAAGCCCGGATAACCAGGGGCAAAATAGTACAAACGATGAAGAGGTTTTGAACCATGGAAAAGACGGTTTTACCCTTGCGATTAGTGGAGGAGGGAGTGTGGGAATGGGTGCGAGTCATGAAGCTGAGATTCAGGGGTCGGATGGTTTGATTCATAGAAGTGGAAGTGTTGTTGGTGATATAGAAGTGGTTACTGGTGTGACTGAGAACCAAGGGCAAACTGGTAATTTTGTCACTGAGAGTCAAGAAGATAGTGATGTGAATCTTTCTCATCCTTCTCTTTCGTGTAATGCGGTTGTTTGTTCTGGATTTGAAGCTTCTAGAGATGAAGTGATGCAGGTGGGAAAATCGTCTCCTAATGATGAATTTGGATTCCCAAATTACCCTCCTGCAAATGGGCTAGGGCCTCCAAATGGGGAAAGCAACTTTGAAGAAGCAGTGGAGTTTGATCCAATTAAGCATCATAATTTCTTCTGTCCTTGGGTTAATGGAAATGTTGCTGCAGCTGGGGTCGAGGTGGGGGTGGGACCCACCTCCACCTCAAGTGGTGCTGGTGGTGGTTGTGGGTGGCAGTTGACTTTAGATGCTTTGGATGGGTTTCAAGGGCCTGAACCCAATCAGACCCTTGAATCTGAATCAGCTGCTTCTCTTTACAAGGATGATCATCAAGTTTCTGGTAGAAAACTCAAGGCGCGACATTCCTTTAACAAAAGCCATGGTCACTAA	2382	44.92	MREEGISSSGDPFLSPNSPHPPLPPPPTAAASSAGASSPAVAINGGSTDWLGHGQGSKAGSLSRISSQPMWISLSTSAHGSALGSSQPSCRPWERGDLLRRLSTFRPANWFGKPKTASSLACARRGWVNVDVDKIQCESCGANLKYNAPDSISTPCDEDFSNQLDEGHNVTCPWRGNSCSESLVQFPPTPPSALVGGYKDRCDGLLQFPFLPLVATSALDQMKVSRGPEIDRFLLQSDMENTKDVLCIYSRAQKLISLCGWEPRWLPNVQDCEEHSAQSAKNGASFNPNKHHNPNKKTISEDSSKKETRSPLLDCSLCGATVRILDFIHVNRPSRFAPNNIDVPEASKKIVITRGISAASGISGWVEAEQQTEDIDEAATTGMDLNLTMGSGLSQKRPLSDLYQDPNLGQAAGSEVGGRAASYESRGPNKRNVDEGGSTVDRPQGIIPHTDSIEGVVIDRDADEVNDSKRARGSGSYKRDYSSGAGPSRVSYFDIDRNALPPSNKDSARASSVIAMDTFCHSDDDNDSMESVENHPGYVGGDEVNYPSVSGVKSPDNQGQNSTNDEEVLNHGKDGFTLAISGGGSVGMGASHEAEIQGSDGLIHRSGSVVGDIEVVTGVTENQGQTGNFVTESQEDSDVNLSHPSLSCNAVVCSGFEASRDEVMQVGKSSPNDEFGFPNYPPANGLGPPNGESNFEEAVEFDPIKHHNFFCPWVNGNVAAAGVEVGVGPTSTSSGAGGGCGWQLTLDALDGFQGPEPNQTLESESAASLYKDDHQVSGRKLKARHSFNKSHGH	793

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lssa7g03412	793	MobiDBLite	consensus disorder prediction	519	568	-	-
	Lssa7g03412	793	MobiDBLite	consensus disorder prediction	550	566	-	-
	Lssa7g03412	793	MobiDBLite	consensus disorder prediction	277	305	-	-
	Lssa7g03412	793	Pfam	C3HC zinc finger-like	92	211	IPR012935	GO:0008270(InterPro)
	Lssa7g03412	793	PANTHER	NUCLEAR-INTERACTING PARTNER OF ALK	1	792	-	GO:0005634(PANTHER)
	Lssa7g03412	793	MobiDBLite	consensus disorder prediction	15	29	-	-
	Lssa7g03412	793	MobiDBLite	consensus disorder prediction	454	476	-	-
	Lssa7g03412	793	MobiDBLite	consensus disorder prediction	396	488	-	-
	Lssa7g03412	793	MobiDBLite	consensus disorder prediction	277	293	-	-
	Lssa7g03412	793	MobiDBLite	consensus disorder prediction	753	793	-	-
	Lssa7g03412	793	MobiDBLite	consensus disorder prediction	1	62	-	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lssa7g03412	-	-

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Lssa	Lssa-Chr1:105290263	Lssa7g03412	Lssa-Chr7:179298572	dispersed
	Lssa	Lssa-Chr3:113162638	Lssa7g03412	Lssa-Chr7:179298572	dispersed
	Lssa	Lssa-Chr4:215254972	Lssa7g03412	Lssa-Chr7:179298572	dispersed
	Lssa	Lssa-Chr7:179298572	Lssa9g03738	Lssa-Chr9:187331699	dispersed