Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lssa7g03457 | ATGAGTTTGACTTTAATGGCTTCCCATTTCTTGACTCCCAACAATTTCAGACTCCAACTTCTCGTTTCATCAAAACCCCAATTCAATTCACATCTCAAATCATCTAATCGGTTTCAATTAAGCATACCCATAGCCAGATTTTCTTCATCGATTCGCTCTATGGGTTCTTCATCTTCATCATCTCAGAAACCAGACACCTCACCTCTAGAGACAGGAAACATGGATTTCAAATCTGTTAGCGATCAAGAATGGAAGAAGAAGCTTACTGGAGAACAGTTTTACGTAACTCGACAAAAGGGAACAGAAAGGGCCTTCTCTGGGGAATACTGGAACACGAAAACCGCTGGGATTTACCATTGCATCTGCTGTGATACTCCATTATTCGAGTCATCGACGAAGTTCGATAGTGGAACTGGCTGGCCTTCGTATTATGAACCAATTGGAAGCAACGTGAAGTCGAAGTTGGATTTGTCGATCATTTTCATGCCTCGACAGGAAGTTTTGTGTGCAGCTTGTGATGCTCATCTTGGTCATGTCTTCGACGATGGTCCTCCGCCTACCGGAAAACGTTACTGCATCAATAGTGCTTCCTTGAAGTTGAACCCGAAGTAG | 612 | 43.14 | MSLTLMASHFLTPNNFRLQLLVSSKPQFNSHLKSSNRFQLSIPIARFSSSIRSMGSSSSSSQKPDTSPLETGNMDFKSVSDQEWKKKLTGEQFYVTRQKGTERAFSGEYWNTKTAGIYHCICCDTPLFESSTKFDSGTGWPSYYEPIGSNVKSKLDLSIIFMPRQEVLCAACDAHLGHVFDDGPPPTGKRYCINSASLKLNPK | 203 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lssa7g03457 | 203 | PANTHER | METHIONINE SULFOXIDE REDUCTASE | 46 | 202 | IPR028427 | GO:0005737(PANTHER)|GO:0006979(InterPro)|GO:0016671(InterPro)|GO:0030091(InterPro)|GO:0033743(PANTHER) | |
| Lssa7g03457 | 203 | Pfam | SelR domain | 83 | 201 | IPR002579 | GO:0033743(InterPro) | |
| Lssa7g03457 | 203 | MobiDBLite | consensus disorder prediction | 52 | 74 | - | - | |
| Lssa7g03457 | 203 | Gene3D | Peptide methionine sulfoxide reductase. | 71 | 203 | - | - | |
| Lssa7g03457 | 203 | NCBIfam | peptide-methionine (R)-S-oxide reductase MsrB | 79 | 202 | IPR002579 | GO:0033743(InterPro) | |
| Lssa7g03457 | 203 | FunFam | Peptide methionine sulfoxide reductase MsrB | 73 | 203 | - | - | |
| Lssa7g03457 | 203 | ProSiteProfiles | Methionine-R-sulfoxide reductase (MsrB) domain profile. | 81 | 203 | IPR002579 | GO:0033743(InterPro) | |
| Lssa7g03457 | 203 | SUPERFAMILY | Mss4-like | 79 | 202 | IPR011057 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lssa7g03457 | K07305 | peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12] |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Lssa | Lssa-Chr7:183245040 | Lssa8g02788 | Lssa-Chr8:117669281 | dispersed |