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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lssa7g03457 ATGAGTTTGACTTTAATGGCTTCCCATTTCTTGACTCCCAACAATTTCAGACTCCAACTTCTCGTTTCATCAAAACCCCAATTCAATTCACATCTCAAATCATCTAATCGGTTTCAATTAAGCATACCCATAGCCAGATTTTCTTCATCGATTCGCTCTATGGGTTCTTCATCTTCATCATCTCAGAAACCAGACACCTCACCTCTAGAGACAGGAAACATGGATTTCAAATCTGTTAGCGATCAAGAATGGAAGAAGAAGCTTACTGGAGAACAGTTTTACGTAACTCGACAAAAGGGAACAGAAAGGGCCTTCTCTGGGGAATACTGGAACACGAAAACCGCTGGGATTTACCATTGCATCTGCTGTGATACTCCATTATTCGAGTCATCGACGAAGTTCGATAGTGGAACTGGCTGGCCTTCGTATTATGAACCAATTGGAAGCAACGTGAAGTCGAAGTTGGATTTGTCGATCATTTTCATGCCTCGACAGGAAGTTTTGTGTGCAGCTTGTGATGCTCATCTTGGTCATGTCTTCGACGATGGTCCTCCGCCTACCGGAAAACGTTACTGCATCAATAGTGCTTCCTTGAAGTTGAACCCGAAGTAG 612 43.14 MSLTLMASHFLTPNNFRLQLLVSSKPQFNSHLKSSNRFQLSIPIARFSSSIRSMGSSSSSSQKPDTSPLETGNMDFKSVSDQEWKKKLTGEQFYVTRQKGTERAFSGEYWNTKTAGIYHCICCDTPLFESSTKFDSGTGWPSYYEPIGSNVKSKLDLSIIFMPRQEVLCAACDAHLGHVFDDGPPPTGKRYCINSASLKLNPK 203
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lssa7g03457 203 PANTHER METHIONINE SULFOXIDE REDUCTASE 46 202 IPR028427 GO:0005737(PANTHER)|GO:0006979(InterPro)|GO:0016671(InterPro)|GO:0030091(InterPro)|GO:0033743(PANTHER)
Lssa7g03457 203 Pfam SelR domain 83 201 IPR002579 GO:0033743(InterPro)
Lssa7g03457 203 MobiDBLite consensus disorder prediction 52 74 - -
Lssa7g03457 203 Gene3D Peptide methionine sulfoxide reductase. 71 203 - -
Lssa7g03457 203 NCBIfam peptide-methionine (R)-S-oxide reductase MsrB 79 202 IPR002579 GO:0033743(InterPro)
Lssa7g03457 203 FunFam Peptide methionine sulfoxide reductase MsrB 73 203 - -
Lssa7g03457 203 ProSiteProfiles Methionine-R-sulfoxide reductase (MsrB) domain profile. 81 203 IPR002579 GO:0033743(InterPro)
Lssa7g03457 203 SUPERFAMILY Mss4-like 79 202 IPR011057 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lssa7g03457 K07305 peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lssa Lssa-Chr7:183245040 Lssa8g02788 Lssa-Chr8:117669281 dispersed