AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lssa7g03466 ATGAAGAGTGCATATAGAAGTGTCATGTTCTATATTGGGCAAAAGGAACTCGAAATGCAATTCAAAATGAACAGGATAGTAGCTCAATGCAAACAAAAATGCGAGACAATGCAAGAAAAATTCACAGAAAAAATGGAACAGTTGCACACTGCATATCAGAAAATGGGCAAAAGGTGTCAAATGATGGAACAAGAAATTCAAAACTTATCCAAAGATAAACAAGAACTCCAAGAAAAATTTTCTGAGAAATCCAGGCAAAAGCGAAAACTGGATGAGATGTATGACCAATTGAGAAGTGAGTATGAGTCGGTCAAACGGTCAGCCATTCAACCTGCAAACAACTTTTTCTCAAGGGGTGGTGGTGATTCTGATCTGTTTTCCAGTCCTGCTAACATGATGGATAACAGAGATCCCATGAGGAAAGATTGGTCGGTTTACACCCCTGACACTCCAGGACCTCGGGAAGATATATGGCCAGCAACCACAAGACAAAACAGTTCTAACTCTGGTGGGCCCTTCGACATCTCTAATAGCCCACCTGTGAAACATTCAGTAAATCCAGTTGAAAACAGAAGAAGTATTGGTCGCCAGATGTTTGGTGGCGGCGGTGGTGGTGGTGGCGGCGGCGGTGGTGGTGTTGGTGGAGCGGGAAATCCTTCGATGACATTGAGAAATCTGATATTATCTCCAATGAAAAGGCCTCAACTCTCTCGTACCCGACCTCAGTTGTTCACGTTATAG 741 43.18 MKSAYRSVMFYIGQKELEMQFKMNRIVAQCKQKCETMQEKFTEKMEQLHTAYQKMGKRCQMMEQEIQNLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYESVKRSAIQPANNFFSRGGGDSDLFSSPANMMDNRDPMRKDWSVYTPDTPGPREDIWPATTRQNSSNSGGPFDISNSPPVKHSVNPVENRRSIGRQMFGGGGGGGGGGGGGVGGAGNPSMTLRNLILSPMKRPQLSRTRPQLFTL 246
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lssa7g03466 246 MobiDBLite consensus disorder prediction 159 184 - -
Lssa7g03466 246 SUPERFAMILY Myosin rod fragments 31 107 - -
Lssa7g03466 246 Coils Coil 52 107 - -
Lssa7g03466 246 MobiDBLite consensus disorder prediction 149 218 - -
Lssa7g03466 246 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CCNB1IP1 HOMOLOG 1 246 - GO:0051026(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lssa7g03466 K10639 E3 ubiquitin-protein ligase CCNP1IP1 [EC:2.3.2.27]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lssa Lssa-Chr3:99737031 Lssa7g03466 Lssa-Chr7:183721411 dispersed
Lssa Lssa-Chr7:183721411 Lssa8g01119 Lssa-Chr8:39265526 dispersed