AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lssa7g03474 ATGACGTCGGGTACGAGAATGCCGACATGGAAGGAGAGGGAGAACAATAAACGGAGAGAGAGGAGGAGGAGAGCGATTGCCGCGAAGATATTCTCCGGACTGAGGATGTACGGAAATTACAAGCTGCCTAAGCATTGTGATAACAACGAAGTCCTCAAAGCCCTCGCCGGCGAAGCTGGTTGGACCGTCGAACCCGACGGCACCACCTATCGTAAGGGATGCAAGCCTTTAGAGCGAATAAACATTAGTGGATCGACGTCAGCAAGCCCATGCTCATCTTACCAACCAAGCCCATACACTTCCTATCACCCGAGCCCAATTGCAAGCCCATCTCACAATCCTCACCCCGATTCTCTAATTCCATGGCTCAAGAATCTATCATCCTCATCAAACTCAACAAAGCTTCCGAATCTTTACATCCACACGGGGTCCATTAGTGCACCCGTGACCCCACCCATTAGCTCTCCAACTGCCCGAATCAAACCCGACATTACTTGGGGCATGGGTCCCACGTCTCCAACTTTTAACCTTGTTGCTTCGAACTCGTTTGGGTTCAAGGAAGGAGTTATATCTCATGGTGGATCGCGAATGTGGACACCTGGACAAAGTGGGACGTGTTCGCCTGTAATTCCTTCGGGATTTGACAACAATGGTGACATTCCAATGGCGGAATTGGTTTCGGATGAATTTGCGTTTGGTTGTAATGTGGGAAAGAAAGTGAAGCCATGGGAAGGAGAGAGGATTCATGAGGTGTGTGGGTCTGATGATCTTGAGCTTACTCTTGGGATATCAAAAATGAGATAA 804 49.0 MTSGTRMPTWKERENNKRRERRRRAIAAKIFSGLRMYGNYKLPKHCDNNEVLKALAGEAGWTVEPDGTTYRKGCKPLERINISGSTSASPCSSYQPSPYTSYHPSPIASPSHNPHPDSLIPWLKNLSSSSNSTKLPNLYIHTGSISAPVTPPISSPTARIKPDITWGMGPTSPTFNLVASNSFGFKEGVISHGGSRMWTPGQSGTCSPVIPSGFDNNGDIPMAELVSDEFAFGCNVGKKVKPWEGERIHEVCGSDDLELTLGISKMR 267
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lssa7g03474 267 MobiDBLite consensus disorder prediction 84 108 - -
Lssa7g03474 267 Pfam BES1-BZR1 plant transcription factor, N-terminal 4 127 IPR008540 -
Lssa7g03474 267 MobiDBLite consensus disorder prediction 1 22 - -
Lssa7g03474 267 MobiDBLite consensus disorder prediction 84 114 - -
Lssa7g03474 267 PANTHER BES1-BZR1 HOMOLOG PROTEIN 3-RELATED 1 160 IPR033264 GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0009742(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lssa7g03474 K14503 brassinosteroid resistant 1/2
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Event-related genes

Select Gene_1 Gene_2 Event_name
128110 Lssa7g03474 Lssa9g03680
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lssa Lssa-Chr4:75281671 Lssa7g03474 Lssa-Chr7:184056242 dispersed
Lssa Lssa-Chr8:164239516 Lssa7g03474 Lssa-Chr7:184056242 transposed
Lssa Lssa-Chr7:184056242 Lssa9g03680 Lssa-Chr9:182530259 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lssa9g03680 ACH 3 284 BZR Transcription Factor family AT4G18890 64.094 4.06e-97 286.0
Lssa8g03677 . 42 88 BZR Transcription Factor family AT1G19350 61.702 4.39e-14 66.2
Lssa7g03474 ACH 1 325 BZR Transcription Factor family AT1G78700 60.615 1.79e-95 282.0
Lssa4g04129 ACH 22 335 BZR Transcription Factor family AT1G75080 64.669 4.32e-106 311.0
Lssa4g01690 . 1 325 BZR Transcription Factor family AT1G78700 63.526 7.89e-107 312.0
Lssa2g02502 . 23 334 BZR Transcription Factor family AT1G75080 60.828 1.22e-103 305.0
Lssa1g00725 ACH 21 334 BZR Transcription Factor family AT1G19350 55.346 2.27e-74 229.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Lssa BES1_N 9.2e-57 No_clan TF BES1