AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lssa7g03475 ATGAAACCGCCACAACCACCACCACTACCACCACCGTGTTCTGTCACTGTCGTTACTGAACACTCCTCATCCTCCTCCAGTTCTCCGTCCATTTCACCTGCTACTACTTCCGACATGTGGAATTACATATGGATCCCTTTTCTGCTGTCTCTCATGAAAGAAGTCAGCTCCGCTAACGCTGCTTCTGAGTCAAAAATCTTCTTGCCCTCTGCTTCTGTTGCTGGTTTGACTTCATCGTGTCCTGCGCCGGATCCTAAGCTGAATTACCGCCCGATAATCGGGATTCTCAGCCATCCAGGCGACGGTGCCTCCGGTCGACTTAATAACGCTACTAATGCCTCGTATATTGCTGCCTCGTATGTCAAATTTGTTGAATCAGCCGGAGCTAGGGTCATTCCTCTCATCTATAATGAACCTTCGGAGGTTCTACAGAGTATAACCTGTTCAATTGCACTGCAGAAACTCAATCTGGTCAATGGAGTGATCTTCACCGGTGGATGGGCTAAGACTGGCCTCTACCTTGATGTTGTAGACAGAATTTTTAAGCAAGTTCTGAAGAAGAATGATGCAGGCGACCATTTCCCATTGCTTGCAATATGCTTAGGTTTTGAACTGCTAACAATGATTGTTAGCAAAAACAATGACATCCTTGAAGGCTTTAGTGCATCAGATCAAGCTTCAACACTCCAGTTCATTAAGAACATAAACGTTGAAGGAACTTTGTTTCAAAGATTTCCTCCTGAGTTACTTGCAAAGATGAGCACAGAATGCCTTGTGATGCAAAACCATAAATTTGGCATATCACCAGAAACTTTTCAAGGAAACATGGAACTCTGCAGTTTCTTCAAGATCTTAACAACCAGTGTTGATGAAAATAACGAGGTATATGTATCAACAGTTCAATCAAAAAGTTACCCTGTGACAGCTGTCCAATGGCACCCAGAGAAAAATGCTTTTGAGTGGGGATTATCGATGATTCCACATTCAGATGATGCAGTTCAAGTGACTCAACATGCTGCCAACTTCTTTGTGAGTGAGGCTAGAAAATCTTACAACAGGCCGCCTACAAAGGAAGTGCTGGATAATCTAATTTACAATTTCAGCCCCACTTATTGTGGGTATGCTGGGAAGGGATACGATGAGGTTTACATCTTCACTGATAAGATTGCTCGAATGTGA 1179 43.51 MKPPQPPPLPPPCSVTVVTEHSSSSSSSPSISPATTSDMWNYIWIPFLLSLMKEVSSANAASESKIFLPSASVAGLTSSCPAPDPKLNYRPIIGILSHPGDGASGRLNNATNASYIAASYVKFVESAGARVIPLIYNEPSEVLQSITCSIALQKLNLVNGVIFTGGWAKTGLYLDVVDRIFKQVLKKNDAGDHFPLLAICLGFELLTMIVSKNNDILEGFSASDQASTLQFIKNINVEGTLFQRFPPELLAKMSTECLVMQNHKFGISPETFQGNMELCSFFKILTTSVDENNEVYVSTVQSKSYPVTAVQWHPEKNAFEWGLSMIPHSDDAVQVTQHAANFFVSEARKSYNRPPTKEVLDNLIYNFSPTYCGYAGKGYDEVYIFTDKIARM 392
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lssa7g03475 392 PANTHER PROTEASE FAMILY C26 GAMMA-GLUTAMYL HYDROLASE 43 386 IPR015527 GO:0005773(PANTHER)|GO:0008242(InterPro)|GO:0034722(PANTHER)|GO:0046900(PANTHER)
Lssa7g03475 392 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 106 332 - -
Lssa7g03475 392 MobiDBLite consensus disorder prediction 1 33 - -
Lssa7g03475 392 Pfam Peptidase C26 91 315 IPR011697 GO:0016787(InterPro)
Lssa7g03475 392 Gene3D - 86 386 IPR029062 -
Lssa7g03475 392 MobiDBLite consensus disorder prediction 16 33 - -
Lssa7g03475 392 FunFam Folate gamma-glutamyl hydrolase 87 386 - -
Lssa7g03475 392 SUPERFAMILY Class I glutamine amidotransferase-like 114 383 IPR029062 -
Lssa7g03475 392 ProSiteProfiles Gamma-glutamyl hydrolase domain profile. 82 386 IPR015527 GO:0008242(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lssa7g03475 K01307 gamma-glutamyl hydrolase [EC:3.4.19.9]
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Event-related genes

Select Gene_1 Gene_2 Event_name
128111 Lssa7g03475 Lssa9g03678
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lssa Lssa-Chr7:184082579 Lssa9g03678 Lssa-Chr9:182492229 wgd