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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lssa7g03477 ATGGGTTGCTCTACATCTTCACTAAATAAAGAACACTCGAGAAGGACAAAAAAGATAAGGAAGCCAAAGCCATGGAAGTTCCCACGTCCGGTGACGTGGAGTCAGCTTGTGCAGATGCGTGATGAGTTTTGGGATACAGCCCCCCACCACGGTGGCAAGAAAGAAATATGGGATGCGATACATGCAGCAGCAGAAGCTGATATAGAGCTTGCTCAAGCAATCATAGACAGTGCTGGTGTCATTGTTCATAAACCCGATATGACAGTTTGTTATGATGAAGGAGGTTCCAAATATGAAATACCGAGGTATGTGTTGAGCGAGCCCACAAACTTGATACAACTGAGTTGA 348 45.11 MGCSTSSLNKEHSRRTKKIRKPKPWKFPRPVTWSQLVQMRDEFWDTAPHHGGKKEIWDAIHAAAEADIELAQAIIDSAGVIVHKPDMTVCYDEGGSKYEIPRYVLSEPTNLIQLS 115
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lssa7g03477 115 PANTHER UBIQUITIN DOMAIN CONTAINING 1 PROTEIN-RELATED 1 112 IPR039869 -
Lssa7g03477 115 MobiDBLite consensus disorder prediction 1 26 - -
Lssa7g03477 115 Pfam Ubiquitin-binding domain 16 113 IPR032752 -
Lssa7g03477 115 Gene3D - 32 105 IPR038169 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lssa7g03477 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lssa Lssa-Chr4:75703272 Lssa7g03477 Lssa-Chr7:184088779 dispersed
Lssa Lssa-Chr7:35417088 Lssa7g03477 Lssa-Chr7:184088779 wgd