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Gene ID

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Or, Query Sequence

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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lssa7g03487	ATGTCGTTGCGTAGGTCGTTCCTATCACGTCGAACCAGCAGCCGGTCGAAGTCGTTTAAGGAATTGACGACCTTATCAAAACCGCCGGAAATTAACATTGCTGCTGTTCCCGGAGACGACGACGTTGTCGGTGAACAGAACGGCGGCGAGAATAATGGACGAGATTCGTGGTCTAATATGTTGCCAGAGCTCTTAGGCGAGATAATCAAACGAGTGGAAACGAGCGATGACCGGTGGCCGCTCCGGAGAAATCTGGTTGCTTGTGGATGTGTTTGTAAAAGCTGGAGAGAAGTTACGAGACAGATCGTAAAGCCTCCTGTTCACAGCGGGAAGATCACATTCCTTTCATGTCTTAAGCAGCCTGGGTCACGTGATTCTCCAATTCAATGCCTGATTAAAAGAAACAAGAAGAACTCAGTGTTCTACCTCTATCTAGCTGCTACTCCATCATTTACAAACAAAGGTAAGTTTCTTTTAGCTGCAAGAAGATACAGACATGGTGCTCACACTGAATACATAATATCACTTGATCCAGACGATTCATCTCAAGGAAGCAATGCTTATGTTGGTAAACTAAGGTCCGATTTTCTTGGCACAAAGTTCACAATATATGACAGCCAACCACCAAACAATGGTGCAAAACAATTGAGTAGCAAATCCGTGAGGCGAATTGCAAACAAACAAATAAGCCCACAAGTTCCATCAAGCAACTTTGAAATTGGAGAAACTTCATACAAATTCAACCTTTTGAAATCAAGGGGTCCAAGAAGAATGGTGTGTTCTCTAACATCCACATCACCAGATCAACAGTTTGACTCTGGTCAAACTCAAACCCTTTTGAGAAACAAAGCTCCAAGGTGGCATGAACATTTGCAATGTTGGTGCTTGAATTTTCATGGGCGGGTGACAGTTGCATCGGTTAAGAATTTTCAGTTGGTGGCAACATTGGACCCGAGTCAACCGGGTGGGAAAGGTGATGGTGAAACGGTTTTGCTTCAGTTTGGAAAAGTTGGTGATGATATGTTCACTATGGATTATAGACAACCATTGTCGGCTTTTCATGCATTTGCCATTTGCTTGACTAGTTTTGGGACAAAGCTTGCATGCGAATAA	1113	43.58	MSLRRSFLSRRTSSRSKSFKELTTLSKPPEINIAAVPGDDDVVGEQNGGENNGRDSWSNMLPELLGEIIKRVETSDDRWPLRRNLVACGCVCKSWREVTRQIVKPPVHSGKITFLSCLKQPGSRDSPIQCLIKRNKKNSVFYLYLAATPSFTNKGKFLLAARRYRHGAHTEYIISLDPDDSSQGSNAYVGKLRSDFLGTKFTIYDSQPPNNGAKQLSSKSVRRIANKQISPQVPSSNFEIGETSYKFNLLKSRGPRRMVCSLTSTSPDQQFDSGQTQTLLRNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATLDPSQPGGKGDGETVLLQFGKVGDDMFTMDYRQPLSAFHAFAICLTSFGTKLACE	370

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lssa7g03487	370	ProSitePatterns	Tub family signature 2.	355	370	IPR018066	-
	Lssa7g03487	370	Pfam	Tub family	118	365	IPR000007	-
	Lssa7g03487	370	CDD	F-box-AtTLP-like	57	101	-	-
	Lssa7g03487	370	PANTHER	TUBBY-RELATED	42	369	-	-
	Lssa7g03487	370	MobiDBLite	consensus disorder prediction	33	56	-	-
	Lssa7g03487	370	SUPERFAMILY	F-box domain	53	101	IPR036047	GO:0005515(InterPro)
	Lssa7g03487	370	ProSitePatterns	Tub family signature 1.	298	311	IPR018066	-
	Lssa7g03487	370	Pfam	F-box domain	57	99	IPR001810	GO:0005515(InterPro)
	Lssa7g03487	370	SUPERFAMILY	Tubby C-terminal domain-like	107	370	IPR025659	-
	Lssa7g03487	370	Gene3D	Tubby Protein; Chain A	113	370	IPR025659	-
	Lssa7g03487	370	PRINTS	Tubby superfamily signature	172	188	IPR000007	-
	Lssa7g03487	370	PRINTS	Tubby superfamily signature	298	314	IPR000007	-
	Lssa7g03487	370	PRINTS	Tubby superfamily signature	188	212	IPR000007	-
	Lssa7g03487	370	PRINTS	Tubby superfamily signature	327	346	IPR000007	-
	Lssa7g03487	370	PRINTS	Tubby superfamily signature	280	297	IPR000007	-
	Lssa7g03487	370	PRINTS	Tubby superfamily signature	348	370	IPR000007	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lssa7g03487	K19600	tubby and related proteins

Event-related genes

Select	Gene_1	Gene_2	Event_name
	127500	Lssa5g03910	Lssa7g03487

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Lssa	Lssa-Chr7:142297724	Lssa7g03487	Lssa-Chr7:184423352	dispersed
	Lssa	Lssa-Chr7:184423352	Lssa9g04244	Lssa-Chr9:215267341	dispersed
	Lssa	Lssa-Chr4:15397297	Lssa7g03487	Lssa-Chr7:184423352	transposed
	Lssa	Lssa-Chr5:278912087	Lssa7g03487	Lssa-Chr7:184423352	wgd

Gene Family Members

Select	Gene	Event_type	S_start	S_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lssa9g04245	ACH	401	445	TUB Transcription Factor family	AT1G25280	95.556	4.46e-25	94.7
	Lssa9g04244	ACH	1	445	TUB Transcription Factor family	AT1G25280	74.388	0.0	625.0
	Lssa7g03487	ACH	1	379	TUB Transcription Factor family	AT1G53320	64.987	1.68e-178	499.0
	Lssa7g02665	ACH	1	445	TUB Transcription Factor family	AT1G25280	73.789	0.0	622.0
	Lssa6g00602	.	30	406	TUB Transcription Factor family	AT2G47900	63.902	0.0	531.0
	Lssa5g00850	ACH	34	413	TUB Transcription Factor family	AT1G47270	55.102	3.27e-142	408.0
	Lssa5g03321	ACH	1	445	TUB Transcription Factor family	AT1G25280	70.175	0.0	594.0
	Lssa5g03910	ACH	1	379	TUB Transcription Factor family	AT1G53320	64.951	6.23e-180	504.0
	Lssa5g05980	.	1	406	TUB Transcription Factor family	AT2G47900	75.795	0.0	595.0
	Lssa4g02982	.	23	397	TUB Transcription Factor family	AT1G16070	53.867	1.09e-144	415.0
	Lssa4g00355	.	24	180	TUB Transcription Factor family	AT1G53320	36.875	1.05e-26	101.0
	Lssa3g02645	.	1	393	TUB Transcription Factor family	AT2G18280	62.53	0.0	507.0
	Lssa1g00274	.	1	455	TUB Transcription Factor family	AT1G76900	62.554	0.0	545.0

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	Lssa	Tub	4.6e-93	CL0395		TF	TUB