AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lssa7g03497 ATGGCTTCTCCCCATTCCATCTATGCAACTTCCCTTCTACTTTTGCTCAGTTTTCAACTACTTTCCACCATTTCTGAAGCTGTTGTGTATGCTTCAAACACCTTCACGTACGTAAACGAAGGTGATTTTGGAGATTATGTCGTCGAGTACAATGCAAATTATCGCGCCCTTCCCCCTTTTAGTAACCCATTCCAGCTTTGTTTCTACAACACCACCCCTAATGCATTCACTCTAGCCCTTCGTATGGGTACAGTCCGATCTGAGTCGCTCATGCATTGGGTTTGGGAAGCTAACCGGGGTAACCCAGTTCGTGAGAACTCTACCCTCACCTTCGGTACAGATGGAAACCTTGTCCTGATGGATTCCGATGGCCACATTGCCTGGCAAACTAAAACCTCCAACAAGGGTGTCGTCGGTTTTCAGGTGCTACCGACCGGTAACATGGTTCTTCATGATAGGAAGGGAAATTTCTTATGGCAAAGCTTCGACTCCCCAATGGACACCCTCTTGGTGGGTCAATCTTTCCGAGCTGGTGGTGCCAGTAAGCTAGTGAGCCGGGCTTCCGCCGCGAACAACAATGGACCATATAGCTTGGTTATGGAGCCTAAACAGTTAGCCATGTATTACAAGAGCACCAACTCGCGTCGCCCAATCCTTTATTGGTCCTCTATCGAATGGTTCACCATGGTCAATGCTGACCCAGTTGTTAGGAGAATAAAAGTGCACGTGGTCACCTGCTCAGTAAAAGATCCGTTGCTTATTTTTCTACTTTCAGTTATAGCTTAG 786 47.2 MASPHSIYATSLLLLLSFQLLSTISEAVVYASNTFTYVNEGDFGDYVVEYNANYRALPPFSNPFQLCFYNTTPNAFTLALRMGTVRSESLMHWVWEANRGNPVRENSTLTFGTDGNLVLMDSDGHIAWQTKTSNKGVVGFQVLPTGNMVLHDRKGNFLWQSFDSPMDTLLVGQSFRAGGASKLVSRASAANNNGPYSLVMEPKQLAMYYKSTNSRRPILYWSSIEWFTMVNADPVVRRIKVHVVTCSVKDPLLIFLLSVIA 261
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lssa7g03497 261 CDD B-lectin 48 165 IPR001480 -
Lssa7g03497 261 Pfam D-mannose binding lectin 94 177 IPR001480 -
Lssa7g03497 261 Gene3D - 42 163 IPR036426 -
Lssa7g03497 261 SMART blect-4 48 165 IPR001480 -
Lssa7g03497 261 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 209 IPR036426 -
Lssa7g03497 261 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE-THREONINE-PROTEIN KINASE SD2-5 52 225 IPR051343 -
Lssa7g03497 261 ProSiteProfiles Bulb-type lectin domain profile. 32 163 IPR001480 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lssa7g03497 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lssa Lssa-Chr7:184917142 Lssa7g03500 Lssa-Chr7:184989961 dispersed
Lssa Lssa-Chr7:184864610 Lssa7g03497 Lssa-Chr7:184917142 proximal