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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lssa7g03511 ATGAAGGGGCACTGCATCAGGTCCTTGAAGATGTTGTTAAGCTGTAACATCGAGAGCTTACATGATGATTGTTTCGAGGGTTCAACGGATGAAAACTACATTTTTAGAGATGTGTTCTTTGGTCATGGAGATGGTAGAGGAACTAAAAGCTGTCTTGTAACTGGAGCAATCACTTTTGAAAATGACGAAAGGAGCCCTAAAAACATCTCATTTCGTTCAGACAGTGACAATTCAGTCATGACAAGTCAGCTGGATTCTATACAGTGTAGCACCTCTGAAGAGTTTGCTTCATTAACAAGAAATGGCCCTGATATTGAAGTTAAAAGAAGAAAAGTGTCATCTGAAGGACATTCTGTTACTAAACCTGTTAAACCTTCTAAGCCAAGATGGAAAGATTCTTCATTTATTGAACTTGATAAAGATGAACTACTATTTGTCACCCCTAAAGATTCCACCATGGATCCTAAACCTCTTTTGCGCTATTACACCTATTCCTTACTTAAATCAGCAGGTTGGTTAATTGGGAGGAGAAACAGAATCACACACTGTAAAGGGCGTGGAGAATACGTCTTCAAATCTCCAGAAGGAAGGCCAATTCGGGAATTTTACAGAGCTTGGAACATGTGTGGACACGAGTTAGTTCAAGATTCAAAATATGATTGTGTACGTGATGACATAAAGTGGACAAATTTCCCTCAATTTCAATCTGATCTTTCCAATGCATTGACCAAAGTCAAAGAGTTGATAAATTCAAAAACAGTGACTGATTTAGCTCATTGTTGGTACTTACTTGATCCCTTTGCAAAAATGGTGTTTATTGACAAGAGTTTGACTTGTCTAAAAGAAGGGAAAGAAGTCAAAGGAAAGAGAAGTTTGGTCAATGTTTCGTATTTGAAAAAACAGAAAGCAAAAATGAAGAAAAAAGGGAATTGTCATATAAAGGATGACGACCTTTTACTCTCGGCTATATTCAGTAATCGTTCCACTCCTACAAAAAAGAACTCCCGTGTTCCAAAAGTTGTGAGAAAGTACAATACTACCCTTGGTGTAAGAACAGTATTGTCTTGGTTGATAAATCTTGGAGTTATTCATATCAATGAAGTGATCCAGTACAGGAACCCACAGGATGATACAGTGATGAAGCATGGTTTAGTAACACAAAATGGTATTTTGTGTAGGTGCTGTAAAAAAGTATTTTGTGTTTCTGAATTCAAGAATCATGTTGGTTTTAGCATGGATAACAACACCACATGTTTGAATCTTTTTATGGAATCTGGAAAGTCTTTCACTTTATGCCAGCTGGAAGCTTGGTCAACCGAATACAAACTTAGGAAAAACGCCACACGGGATGTACAGGTGGCGGTTGACCAAAGTGATGATACTTGTGGACTTTGTGGTGATGGAGGTGAGTTGATATGTTGTGATAACTGCCCTTCAACTTTTCATCAAACGTGCTTGTCTACACAGGAGCTACCTGAAGGCAATTGGTATTGTTCAACTTGCTGTTGTTGGAGTTGTGGGAATGTAATCAATCATATTGAGTCTTCAGTCTTTAAAGCTCTGAAATGTTTGCAGTGTGAACGTAAATATCATTGGGAATGCGTCCAAGGGAATGAAATCGAGGGAGATTTGGTGGGTCCCACCTGGTTCTGTGGAGAAACCTGTAAAATGATACACTCAAGTCTTCATTCCCTGATTGGATGTCGGAATCCAATTTCCGATGGTTTCTCATGGACCCTTTTAAGGTGCATTCATGGCGACCAAAAGGTTCATTCCACTCCGACTTTTGTTGCTTTGAAAGCGGAATGCAATCTAAAACTAGCAGTTGCTCTTACAATCATGGAGGAATGCTTTCTTCCTATGGTGGACACAAGAACCGGAATCTACATGATTCCCCATGTATTATACAACTGGGGATCGGAATTTGTTCGTCTCAACTATGAGGGATTTTATACAGTGGTCCTTGAGAAAGATGACGTTTTACTCTGTGTCGCATCCATAAGGATCCATGGGACAACGGTTGCAGAGCTGCCCCTGATTGCAACATGCAATAAATATAGGCGGCAAGGAATGTGCAGGCGCCTCATGAATGCTATTGAAGAGATGCTGAAGTGGTTTAAAGTTGAGAAGCTAGTGGTGTCTGCAATCCCTAGTTTAGTTGACACGTGGACAAAGGGATTTGGTTTTTTAGGTTTGGAAGGTGATGAGAAAAAAAGGCTGGAAAAAAGTAATCTCATGGTGTTCCCGGGAACTGTATGGCTGGAGAAGCCCATGTACCAGAAACCAGAAGGAATTAATTTCCATTAG 2307 39.79 MKGHCIRSLKMLLSCNIESLHDDCFEGSTDENYIFRDVFFGHGDGRGTKSCLVTGAITFENDERSPKNISFRSDSDNSVMTSQLDSIQCSTSEEFASLTRNGPDIEVKRRKVSSEGHSVTKPVKPSKPRWKDSSFIELDKDELLFVTPKDSTMDPKPLLRYYTYSLLKSAGWLIGRRNRITHCKGRGEYVFKSPEGRPIREFYRAWNMCGHELVQDSKYDCVRDDIKWTNFPQFQSDLSNALTKVKELINSKTVTDLAHCWYLLDPFAKMVFIDKSLTCLKEGKEVKGKRSLVNVSYLKKQKAKMKKKGNCHIKDDDLLLSAIFSNRSTPTKKNSRVPKVVRKYNTTLGVRTVLSWLINLGVIHINEVIQYRNPQDDTVMKHGLVTQNGILCRCCKKVFCVSEFKNHVGFSMDNNTTCLNLFMESGKSFTLCQLEAWSTEYKLRKNATRDVQVAVDQSDDTCGLCGDGGELICCDNCPSTFHQTCLSTQELPEGNWYCSTCCCWSCGNVINHIESSVFKALKCLQCERKYHWECVQGNEIEGDLVGPTWFCGETCKMIHSSLHSLIGCRNPISDGFSWTLLRCIHGDQKVHSTPTFVALKAECNLKLAVALTIMEECFLPMVDTRTGIYMIPHVLYNWGSEFVRLNYEGFYTVVLEKDDVLLCVASIRIHGTTVAELPLIATCNKYRRQGMCRRLMNAIEEMLKWFKVEKLVVSAIPSLVDTWTKGFGFLGLEGDEKKRLEKSNLMVFPGTVWLEKPMYQKPEGINFH 768
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lssa7g03511 768 SUPERFAMILY FYVE-PHD zinc finger 447 502 IPR011011 -
Lssa7g03511 768 Pfam PHD-finger 462 501 IPR019787 -
Lssa7g03511 768 Pfam Tify domain binding domain 383 435 IPR032308 -
Lssa7g03511 768 Gene3D - 633 738 - -
Lssa7g03511 768 SMART PHD-3 461 502 IPR001965 -
Lssa7g03511 768 SMART PHD-3 503 556 IPR001965 -
Lssa7g03511 768 ProSiteProfiles Zinc finger PHD-type profile. 459 504 IPR019787 -
Lssa7g03511 768 CDD NAT-SF 653 714 - -
Lssa7g03511 768 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 644 723 IPR016181 -
Lssa7g03511 768 Gene3D Zinc-RING finger domain, C3HC4 (zinc finger) 446 520 IPR013083 -
Lssa7g03511 768 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 594 759 IPR000182 GO:0016747(InterPro)
Lssa7g03511 768 PANTHER PHD FINGER PROTEIN 12 109 761 - GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0140110(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lssa7g03511 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
127508 Lssa5g03926 Lssa7g03511
128118 Lssa7g03511 Lssa9g03628
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lssa Lssa-Chr7:185872875 Lssa9g02988 Lssa-Chr9:140644661 dispersed
Lssa Lssa-Chr5:279242610 Lssa7g03511 Lssa-Chr7:185872875 wgd
Lssa Lssa-Chr7:185872875 Lssa9g03628 Lssa-Chr9:179495563 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lssa9g00831 . 165 301 PHD Transcription Factor family AT3G53680 54.015 1.03e-40 152.0
Lssa9g00284 ACH 312 978 PHD Transcription Factor family AT1G05380 42.9 1.50e-170 532.0
Lssa9g02852 . 1 504 PHD Transcription Factor family AT2G18880 36.364 6.50e-95 297.0
Lssa9g03628 ACH 544 1025 PHD Transcription Factor family AT3G14980 53.704 4.59e-177 538.0
Lssa9g02988 . 211 984 PHD Transcription Factor family AT4G14920 45.663 0.0 665.0
Lssa8g02593 ACH 17 1020 PHD Transcription Factor family AT5G58610 36.331 0.0 615.0
Lssa8g01343 . 17 406 PHD Transcription Factor family AT5G22260 35.28 2.80e-70 241.0
Lssa8g00552 . 1545 1704 PHD Transcription Factor family AT5G35210 36.875 2.31e-22 100.0
Lssa8g02105 ACH 292 980 PHD Transcription Factor family AT5G36670 41.176 2.51e-174 544.0
Lssa8g03377 ACH 2 597 PHD Transcription Factor family AT3G24440 45.382 8.76e-171 497.0
Lssa8g04284 . 689 1002 PHD Transcription Factor family AT3G14980 48.555 3.51e-95 303.0
Lssa8g00415 . 326 403 PHD Transcription Factor family AT5G22260 39.759 6.12e-06 47.8
Lssa8g04490 . 685 760 PHD Transcription Factor family AT4G14920 35.802 4.78e-07 52.8
Lssa7g00910 . 229 297 PHD Transcription Factor family AT3G53680 55.072 8.34e-21 92.8
Lssa7g02247 . 294 998 PHD Transcription Factor family AT4G14920 46.586 0.0 670.0
Lssa7g03511 ACH 542 1025 PHD Transcription Factor family AT3G14980 54.806 4.74e-174 530.0
Lssa7g01845 . 696 736 PHD Transcription Factor family AT5G58610 45.455 1.43e-06 48.9
Lssa7g01895 . 749 949 PHD Transcription Factor family AT2G36720 37.931 6.35e-36 130.0
Lssa7g01937 . 1 685 PHD Transcription Factor family AT4G30200 44.034 6.20e-170 504.0
Lssa7g01893 . 728 831 PHD Transcription Factor family AT3G53680 32.692 2.65e-11 56.6
Lssa6g01153 . 1542 1706 PHD Transcription Factor family AT5G35210 83.636 9.48e-85 286.0
Lssa6g00580 . 27 160 PHD Transcription Factor family AT5G58610 28.058 6.47e-09 55.1
Lssa6g03147 . 544 902 PHD Transcription Factor family AT5G36670 35.248 3.55e-69 239.0
Lssa6g00429 . 615 661 PHD Transcription Factor family AT5G22260 44.681 2.52e-06 49.7
Lssa6g03846 . 26 124 PHD Transcription Factor family AT5G58610 29.412 8.86e-07 49.7
Lssa6g00579 ACH 27 183 PHD Transcription Factor family AT5G58610 25.478 7.80e-07 45.8
Lssa6g01478 . 253 973 PHD Transcription Factor family AT2G36720 45.59 0.0 639.0
Lssa6g00973 ACH 487 973 PHD Transcription Factor family AT2G36720 44.219 4.66e-144 439.0
Lssa6g02153 . 130 257 PHD Transcription Factor family AT5G57380 27.857 2.80e-08 54.7
Lssa6g02408 . 875 1597 PHD Transcription Factor family AT5G12400 42.876 9.31e-175 563.0
Lssa5g00281 . 835 933 PHD Transcription Factor family AT3G14980 65.657 8.79e-40 137.0
Lssa5g03137 ACH 93 234 PHD Transcription Factor family AT3G24440 63.38 3.33e-55 181.0
Lssa5g05886 . 628 923 PHD Transcription Factor family AT1G05380 45.455 1.18e-82 270.0
Lssa5g05825 . 717 804 PHD Transcription Factor family AT3G14980 30.357 3.23e-07 53.1
Lssa5g05890 . 628 960 PHD Transcription Factor family AT1G05380 47.181 4.14e-95 311.0
Lssa5g04628 . 15 984 PHD Transcription Factor family AT4G14920 45.248 0.0 762.0
Lssa5g05480 ACH 10 975 PHD Transcription Factor family AT5G58610 36.433 0.0 619.0
Lssa5g03926 ACH 7 1024 PHD Transcription Factor family AT3G14980 42.421 0.0 733.0
Lssa5g00374 . 668 723 PHD Transcription Factor family AT3G53680 60.938 2.99e-19 79.7
Lssa5g05889 ACH 628 923 PHD Transcription Factor family AT1G05380 49.498 2.72e-93 301.0
Lssa5g00075 . 29 160 PHD Transcription Factor family AT5G58610 28.03 4.44e-10 60.8
Lssa4g00635 . 27 160 PHD Transcription Factor family AT5G58610 30.986 8.55e-07 50.4
Lssa4g05027 ACH 684 760 PHD Transcription Factor family AT4G14920 34.146 4.31e-07 51.2
Lssa4g04445 . 855 929 PHD Transcription Factor family AT1G05380 58.667 1.97e-24 94.7
Lssa4g02198 ACH 130 217 PHD Transcription Factor family AT5G57380 29.358 1.88e-08 55.5
Lssa4g01103 . 128 215 PHD Transcription Factor family AT5G57380 29.245 1.92e-09 59.7
Lssa3g03439 . 624 714 PHD Transcription Factor family AT3G53680 59.574 5.74e-29 110.0
Lssa3g03349 . 624 728 PHD Transcription Factor family AT3G53680 64.22 4.14e-38 136.0
Lssa3g02842 . 765 938 PHD Transcription Factor family AT1G05380 48.588 2.55e-46 163.0
Lssa3g02280 . 200 667 PHD Transcription Factor family AT5G22260 33.6 1.05e-72 241.0
Lssa3g03347 . 624 714 PHD Transcription Factor family AT3G53680 57.447 3.23e-26 104.0
Lssa3g04251 . 81 661 PHD Transcription Factor family AT5G22260 31.664 3.68e-86 282.0
Lssa3g03440 . 624 714 PHD Transcription Factor family AT3G53680 59.574 3.57e-29 110.0
Lssa3g04587 . 746 830 PHD Transcription Factor family AT2G36720 37.5 1.18e-15 69.7
Lssa3g02558 ACH 650 722 PHD Transcription Factor family AT5G36670 42.308 1.48e-07 53.1
Lssa3g01591 . 684 760 PHD Transcription Factor family AT4G14920 35.366 1.25e-06 51.2
Lssa2g02427 ACH 681 760 PHD Transcription Factor family AT4G14920 35.294 6.03e-08 55.8
Lssa2g02861 . 835 933 PHD Transcription Factor family AT3G14980 65.657 8.79e-40 137.0
Lssa2g01044 . 130 310 PHD Transcription Factor family AT5G57380 23.737 7.36e-09 57.4
Lssa2g03618 ACH 41 831 PHD Transcription Factor family AT3G53680 51.716 0.0 793.0
Lssa1g03519 . 803 894 PHD Transcription Factor family AT2G36720 44.565 3.17e-18 83.6
Lssa1g03531 . 853 903 PHD Transcription Factor family AT2G36720 45.098 1.32e-08 50.1
Lssa1g03518 . 874 941 PHD Transcription Factor family AT2G36720 39.706 9.91e-08 46.6
Lssa1g03525 . 803 894 PHD Transcription Factor family AT2G36720 44.565 3.63e-20 82.0
Lssa1g03520 . 803 894 PHD Transcription Factor family AT2G36720 35.87 8.08e-11 56.6
Lssa1g04453 ACH 130 217 PHD Transcription Factor family AT5G57380 30.612 1.93e-08 55.5
Lssa1g03523 . 803 894 PHD Transcription Factor family AT2G36720 35.87 8.08e-11 56.6
Lssa1g03521 . 803 894 PHD Transcription Factor family AT2G36720 35.87 8.08e-11 56.6
Lssa1g03528 . 803 894 PHD Transcription Factor family AT2G36720 44.565 3.63e-20 82.0
Lssa1g01392 . 695 1002 PHD Transcription Factor family AT3G14980 51.07 2.42e-98 311.0
Lssa1g03517 . 803 894 PHD Transcription Factor family AT2G36720 35.87 8.08e-11 56.6
Lssa1g03526 . 803 894 PHD Transcription Factor family AT2G36720 35.87 8.08e-11 56.6
Lssa1g02015 ACH 175 300 PHD Transcription Factor family AT3G53680 56.349 5.15e-43 160.0
Lssa1g01886 ACH 196 971 PHD Transcription Factor family AT2G36720 40.139 0.0 593.0