AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lssa7g03515 ATGGCTTCAGGGATATTAGATGCGGACAAGATAAGCAAAGGAAAGAGTAAGTGGGGAGAGGGTAATAAAGTCTACACGAGAAGATTCAAAAGGATCGCGAAGAACACCACCGCCGCTGCCCCCTCCTCCCCAACCACAACCGACACCGTCGCCGCTACATCTCCGCCTACTACCAGAACCAACACATCCAATCCAACTTCTCCACCCACTGCCTCAAACAACGAGCAAAATCTAGCTACTGAAGACGCGAATTCGGAACATCAACATACTCTATCGCCGGTAGTAGAGGTATCAGATGATCATTCGGTTCAAATTGCCGCTTCCCCAAATCAGCCCACCGGGAACGGTGTGATAAAACCGGTTGTTGTTATTGTCGGCGATCGGGTTAGGATTAATTTAAAAGCGGCGAAGGCTAAGAATGAGATTATCGAGCTTAGAGAGAAGCTGAGAGCCGAGCTTAATCAAGTCCGACGTGTATCTCAGAAACTTGAAGATAAAGAAGCTGAGCTAACCACCTTCTCCGCTGTTCTTGCTGTTCCTGCCGACGTTGAAGCTTACAGTCATTCACAGTATTCAGGTAATGATATCATCGAGAGGAGAGCTTTGCTCAGAGTGAATTCAGAAATGGGTACTGATTTTGTGGACAGGAGAGCCTTGATGAGACTGAATTCTGATATGGGTTCGGCTCCCAATACCGACATGAGGCCTTTTAGGCAACTCAATGTATCAGTTGTGGATAACAACCATGGAGTCGGTGAGTTTGTTGAAAAAGAAAAAAGGACACCAAAGGCTAATCAGTATTACAGGAATTCAGATTTCCTTCTTGGAAAAGACAGATTACCACCTGAAACCAACAAGAGGCAGAAAGCTAATGGTGGAAGAAAACACAGCAAGGAATCAGATTATTCTTCTGGACATGAAAGACACAGGAATCAAATGTTCAAGAACTGCAACAATTTGCTTCAGAGGCTGATGAAGCACAAACATGGTTGGGTGTTTAACGAACCTGTTAATGCAAAGCTTCTTGGACTCCATGATTACCATGACATAATCAAACACCCGATGGATTTTGGCACAATTAAGAGTCGACTTGCTCAAAACTTCTACAAGTCTCCCATGGAGTTTGCAGAGGATGTGAGGCTGACTTTTTACAACGCCATGACATATAATCCAAAAGGACAAGATGTACATGTTATGGCAGAACAATTATCAAATATTTTTGAAGAAAGGTGGTCAGTGATTGAATCTGAATCAAACCCAGATTGGAGATATGGAATGATTTATGATGCAAACACTCCAACTCCAACAAGTAGAACACCCACTTCAAGAAAAGCTCCTCATTTTGCACATGCTCCATCAAGAACACTGTACAGGTCAGAATCCATGTCTTTACCTTTCATGAATCGTCCAAAACCCAAAATTGCCCCTCCAAGTAGGACACCAGCACCCAAGAAACCCAAAGCTAAAGATCCCAACAAGAGGAACATGACATATGAAGAGAAGCAAAAACTGAGTACAAATCTTCAAAGCCTACCTTCCGAAAAGCTCGACAACATTGTCCAAATCATCAAAAAGAAGAACACTTCACTTTCTCAACATGATGATGAGATTGAAGTTGATATCGATAGTGTTGATATAGAAACTCTATGGGAACTCGATCGGTTTGTCACAAATTACAAGAAGAGTTTGAGTAAACACAGAAGGAGAGCTGAACTTGCTCAACAAGCTAATCGAACTGTGTTACAAAACCCGAACCCTATGACATCCACTATGGAGGCCCCAAAAGAAAATAATAAAACAAGTAAGATTATCTTTATCTATCTAAGAATGAATGATGTTATTGATTTGATATTAAATTGTGAATGTTTGTTAATGGTGTTGAAGGAGGTGAGAAGAGCATTGCTGGAAGTGGTGGTGGTGAAGGAGGAGATAATGGGGTTGGCAGTAGTAGGTCTAGTAGTTCAAGCAGTTCTAGTAGTGATTCTGGATCATCTTCAAGTGATTCAGATAGTGATAGTTCATCTGAAGATGGATCGGATGCAGATGCAGATGCAGCTCATTCACCTACAAGTTGAATGGCATAGATTGAGTAAGATTTTCATCAACAACTCAACTGACAGGTGTCCTAAGTCCTAA 2136 41.99 MASGILDADKISKGKSKWGEGNKVYTRRFKRIAKNTTAAAPSSPTTTDTVAATSPPTTRTNTSNPTSPPTASNNEQNLATEDANSEHQHTLSPVVEVSDDHSVQIAASPNQPTGNGVIKPVVVIVGDRVRINLKAAKAKNEIIELREKLRAELNQVRRVSQKLEDKEAELTTFSAVLAVPADVEAYSHSQYSGNDIIERRALLRVNSEMGTDFVDRRALMRLNSDMGSAPNTDMRPFRQLNVSVVDNNHGVGEFVEKEKRTPKANQYYRNSDFLLGKDRLPPETNKRQKANGGRKHSKESDYSSGHERHRNQMFKNCNNLLQRLMKHKHGWVFNEPVNAKLLGLHDYHDIIKHPMDFGTIKSRLAQNFYKSPMEFAEDVRLTFYNAMTYNPKGQDVHVMAEQLSNIFEERWSVIESESNPDWRYGMIYDANTPTPTSRTPTSRKAPHFAHAPSRTLYRSESMSLPFMNRPKPKIAPPSRTPAPKKPKAKDPNKRNMTYEEKQKLSTNLQSLPSEKLDNIVQIIKKKNTSLSQHDDEIEVDIDSVDIETLWELDRFVTNYKKSLSKHRRRAELAQQANRTVLQNPNPMTSTMEAPKENNKTSKIIFIYLRMNDVIDLILNCECLLMVLKEVRRALLEVVVVKEEIMGLAVVGLVVQAVLVVILDHLQVIQIVIVHLKMDRMQMQMQLIHLQVEWHRLSKIFINNSTDRCPKS 711
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lssa7g03515 711 Gene3D - 489 569 IPR038336 -
Lssa7g03515 711 MobiDBLite consensus disorder prediction 433 454 - -
Lssa7g03515 711 MobiDBLite consensus disorder prediction 1 90 - -
Lssa7g03515 711 SMART bromo-6 306 416 IPR001487 GO:0005515(InterPro)
Lssa7g03515 711 MobiDBLite consensus disorder prediction 36 90 - -
Lssa7g03515 711 SUPERFAMILY Bromodomain 296 420 IPR036427 GO:0005515(InterPro)
Lssa7g03515 711 MobiDBLite consensus disorder prediction 279 311 - -
Lssa7g03515 711 Gene3D - 293 421 IPR036427 GO:0005515(InterPro)
Lssa7g03515 711 Pfam Bromodomain extra-terminal - transcription regulation 496 557 IPR027353 -
Lssa7g03515 711 Pfam Bromodomain 317 401 IPR001487 GO:0005515(InterPro)
Lssa7g03515 711 Coils Coil 128 169 - -
Lssa7g03515 711 PRINTS Bromodomain signature 328 341 IPR001487 GO:0005515(InterPro)
Lssa7g03515 711 PRINTS Bromodomain signature 360 378 IPR001487 GO:0005515(InterPro)
Lssa7g03515 711 PRINTS Bromodomain signature 378 397 IPR001487 GO:0005515(InterPro)
Lssa7g03515 711 PRINTS Bromodomain signature 344 360 IPR001487 GO:0005515(InterPro)
Lssa7g03515 711 MobiDBLite consensus disorder prediction 466 496 - -
Lssa7g03515 711 CDD Bromo-plant1 313 411 IPR037377 -
Lssa7g03515 711 MobiDBLite consensus disorder prediction 10 27 - -
Lssa7g03515 711 MobiDBLite consensus disorder prediction 275 311 - -
Lssa7g03515 711 ProSiteProfiles Bromodomain profile. 325 397 IPR001487 GO:0005515(InterPro)
Lssa7g03515 711 ProSiteProfiles NET domain profile. 486 567 IPR027353 -
Lssa7g03515 711 PANTHER OSJNBA0053K19.4 PROTEIN 34 595 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lssa7g03515 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
128119 Lssa7g03515 Lssa9g03621
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lssa Lssa-Chr7:185903644 Lssa9g04101 Lssa-Chr9:208217037 dispersed
Lssa Lssa-Chr7:37344119 Lssa7g03515 Lssa-Chr7:185903644 wgd
Lssa Lssa-Chr7:185903644 Lssa9g03621 Lssa-Chr9:179385586 wgd