AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lssa7g03549 ATGGAGGAAGAATACTCTTTCGTTGATACTTCGAAACTGCTCCAAGCAGCATCTGACTTCTCGTTTGATCCTGGTACTCGGTCAGAAGCTGCTGTGAAGGAATTTCTCGCTTCTTTTCCCCTTCCGGTGATCATCAATGCTTTGCAAACCAAAGGAGATGTGCCTGGTTTGGAGGATGCACTGATTGATTGTCTAGAAAAGATATTCAAAACAAAATATGGAGCTTCCCTTATCCCACATTTCATGCCATTCATTCTGGTTGGCCTTCAAGCATACTCTCAGAGAGTCAGGACCTTGTCATGTGAAACGATCTCCAGCCTTTTGAAGAATCTTGAAGATACTTCTGGTTTAGCCACTTCACTAATCAAAGAAAATGGCGTGTATCCACTTTTACTTGATTGTCTTGTTGATGGTGATGAACAAGTAGCTGTTGCTGCAACAGATTCAATCAGGGATCTAGCATGCTCTCAACAAGGGATTGAAATCATATTCCCAGCTACACCCAATGAAGCTACAGATATTACAAATTTAGCTGCAAGATGTTCATCACTGGGGCGTGTTCGGGTTTTGGCATTGATAGTGAAGCTGTTTTCTACTTCAAATGCAGTTGCATCTTTAGTTTACAACTCAAATCTTCTTGGCCTCTTAGAGGCAGAAGTTCGCAATGTTAATGATACACTCGCAACCTTGAGTGTTTTGGAACTTCTTTATGAGTTGGCTGAGGTTCAACATGGAATGGAATATGTTCTACGCACCAATATTTTGCAGCTACTTATTTCCATAATCAGAAATTCTACTGCTGAATCAATGTTGAGATCAAGGGCAATGATGATAAGTGGACGACTTTTATCCAAAGAGAATGTTCTCATGTTTATAGATGAATCCAGTATAAAAGCTGTGATTTCAGCCATTGATGAAAGGCTTTCAGTGTTGGATAATAGTCAAGATGCAGATGAATGTGAATGTGGTCTTGAAGCAATGGGGCAAATAGGGTCATCAACACAAGGGGCTGTTTTGTTGATATCAAACACATCTGCTGCTAGACGTGTTGTTAATGCTGCATTTGATCTGCATGGGCGTGGAAAACAACTGGCTGCGTTGCATTCTCTTGGGAATATTGTGGGAGGAACTCGCCCTGAAAACAACAAATTACTGAATGCGGATTCTGAAGAAAGCCTTAAAAGATTAATATATGAAACAGCATCCAACACTCCAAAACTTATTCCATCTGGACTTGTTCTCTCGATTCTCAAACTCGAGTCTGAATTTCGTATTGCGGGTTATAGAATGATATCAGGATTGGGTGCTAGACCATGGTTTCTAGTGGAGATATGTTCCAGACAAGAGATAATAAAGATATTGACGGATTCGTTTACAGAAACAACTAAAATAGGCATGGAGGCTAGATATAATTGTGTTGAGGCGATCTATAAGGCTCTTTCATCATCATCAAAGTTTCTGAACGATCCGGCTCTTTCTGGGACAGCCGAAAAGCTGGTGGAGGCTATTAGAAAGGGCCCATATCTTGCGAAAGGAAGACAAAGGGAAGCCCAACCTGAGGTGGCAACGGCTGACAGATTTTAG 1584 41.16 MEEEYSFVDTSKLLQAASDFSFDPGTRSEAAVKEFLASFPLPVIINALQTKGDVPGLEDALIDCLEKIFKTKYGASLIPHFMPFILVGLQAYSQRVRTLSCETISSLLKNLEDTSGLATSLIKENGVYPLLLDCLVDGDEQVAVAATDSIRDLACSQQGIEIIFPATPNEATDITNLAARCSSLGRVRVLALIVKLFSTSNAVASLVYNSNLLGLLEAEVRNVNDTLATLSVLELLYELAEVQHGMEYVLRTNILQLLISIIRNSTAESMLRSRAMMISGRLLSKENVLMFIDESSIKAVISAIDERLSVLDNSQDADECECGLEAMGQIGSSTQGAVLLISNTSAARRVVNAAFDLHGRGKQLAALHSLGNIVGGTRPENNKLLNADSEESLKRLIYETASNTPKLIPSGLVLSILKLESEFRIAGYRMISGLGARPWFLVEICSRQEIIKILTDSFTETTKIGMEARYNCVEAIYKALSSSSKFLNDPALSGTAEKLVEAIRKGPYLAKGRQREAQPEVATADRF 527
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lssa7g03549 527 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 5-RELATED 1 527 IPR019538 GO:0005829(PANTHER)|GO:0043248(InterPro)
Lssa7g03549 527 Gene3D - 26 163 IPR011989 -
Lssa7g03549 527 SUPERFAMILY ARM repeat 41 398 IPR016024 -
Lssa7g03549 527 Gene3D - 174 506 IPR011989 -
Lssa7g03549 527 Pfam Proteasome non-ATPase 26S subunit 77 522 IPR019538 GO:0043248(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lssa7g03549 K06692 26S proteasome non-ATPase regulatory subunit 5