AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lssa7g03583 ATGGCGGCGAATGGCGTGAAATCGGCGGTAACATCTCAGGCATACCTGGAGGGATCTCAGGTCAAACAAACTAAATCACTCATCTCTGAGCTATGCCGGCTGTTTTACAACCTAGGTTGGGTCTCCGGCACCGGCGGAAGTATCACCGCCAAGGTCCACGACGACTCCGTTCCCAAATCAGAGCAACTCATAATCATGTCCCCCTCCGGTGTGCAAAAGGAAAGGATGGTAGAAGAAGACATGTATGTATTATCATCAACTGGTGATATTTTGTTTTCTCCATCGCCGAAGCCTTACCCTCATAAACCTCCCAAATGTTCAGATTGTGCACCTCTTTTCATGAAGGCTTATGATAAGCGTAATGCTGGTGCAGTCATTCATAGTCACGGAATGGAATCTTGTCTTGTAACTATGATGGATCCATTGGCGAAAGAATTTAGGATCACTCATATGGAGATGATTAAAGGAATACAAGGCCATGGTTACTATGATGAACTTGTGGTTCCTATAATAGAAAACACAGCTCAAGAAAGAGAGTTAACAGAATCTCTTGCTGCAGCAATTGAAGCATACCCAAAGACAACTGCTGTTCTTGTCAGAAACCATGGTATTTATGTATGGGGAGATTCCTGGATTAGTGCCAAAACTCAATCTGAATGCTACCATTATCTCTTTGAAGCTGCGATTAAGCTTCATCAACTAGGCCTTGACTGGTCAACTCCAAGTCATGGTCCTAAACCACTTTTATGTGGTCAAAGTCAAACTACAAACCCATCTCATCGTTGTGTTGTTCTTGATATTGAAGGGACAACAACGCCTATATCTTTTGTCACTGATGTTCTTTTTCCATATGCACGTGACAATGTGCAAAAACACCTGGAAGAAACATATGACACTGATGCCACTCAAGATGATATTAAATTGTTACGTTCTCAAGTAGAAGATGATTTAAAAAATGGGGTTGCAAATGCTGTTATAATTCCATCTGATGAGGCTGGAAAACAGGAAGTGATTGCTGCTTTGGTTGCTAATGTTGAAGGGATGATAAAATCTGATAGGAAAATTACTTCTTTAAAACAATTACAAGGTCACATATGGCAAACTGGATTTGAAAAAAATGAACTCAAAGGAGTTGTTTTTGATGATGTTCCTGTTTCTCTTCAAAAGTGGCATTCTTCTGGTATAAAAGTGTATATATATTCAAGTGGTAGCAGATTGGCGCAAAGGCTATTATTTGGATACTCAAATCACGGGGACTTGAGAACATATTTAAGTGGATTTTTCGACACCACAGTGGGGAACAAGAAGGAGAGAAAAAGTTATGTTGAAATTTGTGAATCAGTTGGAGTTCATAAGCCTTCAGATGTCTTATTTGTTACAGATGTTTTTCAAGAAGCTGTAGCTGCAAAGGCAGCTGGTTTGGAGGTGATAATATCTGTTCGGCCTGGAAACGGGCAGCTGCCCGAGAACCATGGATTCAAAACGGTCAAGTCTTTTTCGGAGATATAA 1509 40.69 MAANGVKSAVTSQAYLEGSQVKQTKSLISELCRLFYNLGWVSGTGGSITAKVHDDSVPKSEQLIIMSPSGVQKERMVEEDMYVLSSTGDILFSPSPKPYPHKPPKCSDCAPLFMKAYDKRNAGAVIHSHGMESCLVTMMDPLAKEFRITHMEMIKGIQGHGYYDELVVPIIENTAQERELTESLAAAIEAYPKTTAVLVRNHGIYVWGDSWISAKTQSECYHYLFEAAIKLHQLGLDWSTPSHGPKPLLCGQSQTTNPSHRCVVLDIEGTTTPISFVTDVLFPYARDNVQKHLEETYDTDATQDDIKLLRSQVEDDLKNGVANAVIIPSDEAGKQEVIAALVANVEGMIKSDRKITSLKQLQGHIWQTGFEKNELKGVVFDDVPVSLQKWHSSGIKVYIYSSGSRLAQRLLFGYSNHGDLRTYLSGFFDTTVGNKKERKSYVEICESVGVHKPSDVLFVTDVFQEAVAAKAAGLEVIISVRPGNGQLPENHGFKTVKSFSEI 502
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lssa7g03583 502 Gene3D - 20 248 IPR036409 -
Lssa7g03583 502 NCBIfam HAD-IA family hydrolase 393 473 IPR006439 -
Lssa7g03583 502 CDD HAD-EP 262 483 IPR023943 GO:0000287(InterPro)|GO:0019509(InterPro)|GO:0043874(InterPro)
Lssa7g03583 502 Hamap Probable bifunctional methylthioribulose-1-phosphate dehydratase-enolase-phosphatase E1. 13 502 IPR027505 -
Lssa7g03583 502 SFLD enolase-phosphatase 261 501 IPR023943 GO:0000287(InterPro)|GO:0019509(InterPro)|GO:0043874(InterPro)
Lssa7g03583 502 PANTHER ENOLASE-PHOSPHATASE E1 256 502 - GO:0019509(PANTHER)|GO:0043874(PANTHER)
Lssa7g03583 502 FunFam Probable bifunctional methylthioribulose-1-phosphate dehydratase-enolase-phosphatase E1 21 246 - -
Lssa7g03583 502 Gene3D - 274 369 - -
Lssa7g03583 502 SMART Aldolase-II-2 26 229 IPR001303 -
Lssa7g03583 502 SUPERFAMILY HAD-like 261 502 IPR036412 -
Lssa7g03583 502 Hamap Enolase-phosphatase E1 [ENOPH1]. 261 502 IPR027511 GO:0019509(InterPro)
Lssa7g03583 502 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 261 501 - -
Lssa7g03583 502 FunFam Probable bifunctional methylthioribulose-1-phosphate dehydratase-enolase-phosphatase E1 370 502 - -
Lssa7g03583 502 SUPERFAMILY AraD-HMP-PK domain-like 22 241 IPR036409 -
Lssa7g03583 502 Pfam haloacid dehalogenase-like hydrolase 261 473 - -
Lssa7g03583 502 NCBIfam acireductone synthase 261 500 IPR023943 GO:0000287(InterPro)|GO:0019509(InterPro)|GO:0043874(InterPro)
Lssa7g03583 502 NCBIfam methylthioribulose 1-phosphate dehydratase 28 234 IPR017714 GO:0005737(InterPro)|GO:0019509(InterPro)|GO:0046872(InterPro)
Lssa7g03583 502 Hamap Methylthioribulose-1-phosphate dehydratase [APIP]. 13 237 IPR027514 GO:0005737(InterPro)|GO:0019509(InterPro)|GO:0046872(InterPro)
Lssa7g03583 502 FunFam Probable bifunctional methylthioribulose-1-phosphate dehydratase-enolase-phosphatase E1 274 370 - -
Lssa7g03583 502 Pfam Class II Aldolase and Adducin N-terminal domain 28 228 IPR001303 -
Lssa7g03583 502 Gene3D - 370 502 IPR023214 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lssa7g03583 K16054 methylthioribulose 1-phosphate dehydratase / enolase-phosphatase E1 [EC:4.2.1.109 3.1.3.77]
Lssa7g03583 K09880 enolase-phosphatase E1 [EC:3.1.3.77]
Lssa7g03583 K08964 methylthioribulose-1-phosphate dehydratase [EC:4.2.1.109]
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Event-related genes

Select Gene_1 Gene_2 Event_name
128128 Lssa7g03583 Lssa9g03586
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lssa Lssa-Chr7:189623023 Lssa9g03586 Lssa-Chr9:176715469 dispersed