AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lssa7g03591 ATGAGAGGACCGGTGATCGGAAAGTACCCATCAAGCGACGGAAATGGTGAAGTCGGCGCCGGAAACGGAATCATAAAGCACAATCGGAAATGCAGAGATATTGTGTTTCTTGTTTTCTTCATAGCTTTCTGGATCTCCATGATTGTTAACTCCAGCTTCGGTTTCAACCAAGGAAACCCATTAAGGCTAAATTTCGGGTTGGATTATAAAGGAAATGTATGTGGAGGAAAACATTCCGATTTTGACCTCCGTGAATTGGAACTCAAATATTGGGTTAACCCTAATCAAGTTTACCAAAGTGGCATGAAGAACAGCGGGGTAAAACTGTCAAATGCTCGAACCATATGCTTATTAGACTGTCCAATACCCTCGGAAGATTCTTTAAATTGGGTTTGTGATTATCCAGAGGGAGATATTCGTCTTTCTTTAGATGATTGGATCGATATGAATTATGATTATTTTGCCGATCTTACCCCTGAACTTAGAAACACTTCTCTTCAACTTCAAGGCCCTTGTTACCCTGTCATTTTTCCAAGCGTAAACGTTTATTGGAGTTGCCAGTTTATTGATCGACCATCAAATGTTTCTTTGACTAATTGGAAACGAATGAATGGAGTTACAATCAATGATGATATGATCATAGATAAATCTATTCATAACTCCATTAATGCACGATCTTCTGTATTGAAGAGATATGTCGCGGATGTTGGAAAATCATGGCCCGTGTTGATTGTTTGTGGAGGACTTTTGCCTTTATTTTTATCGCTATTGTGGCTTTTAATGATCCGACATTTTGTGACCGGAATGCCCTGGGTGACTATTTTTCTCTTTAATGGCCTTATCATATCAGTCACAATGTTCTACTACATGAAAGCTGGATGGATTGGAAACGATGCGATTTCGCCTATCATTGGCGAACATGATCCATACTATCATGTCACTTCAAGGGAGCAACATCATATGCGAGCAGCCGCTTTTCTCATGACATGTGTCATGATCATATCCGTTTTATCATCAATCGCCATTGTTCGCCGGATTCTCATGGCAACATCAGTGGCAGCAAAGGTGATCGGAGAAGTTCACGCGTTGATAATTTTTCCGGTGATCCCATACCTAATTCTGGCGGTGTTCTACATGATCTGGGTGTCGGCCGCCCTCCACCTTTTCAGCTCCGGCGAGATAGTCCGCAATGATTGCAGCACAAATTGTTGTGCATACGATTTGAAAGCCAAAAGGGTGAGTTGCGATGATTGTTGTGGATATAGCATTCATTACACCAATCATATTGCAGCTTCGATTCTCTTCCACTTGTTTGGATGCTATTGGGCCACTCAATTTCTCATCGCCTCTTCTTCCACTGTCATTGCTGGCTCCGTGGCTTCTTACTATTGGGCTCGTGGAGAATCATCGACAACGATTCCGTTTCTTCCGGTTTTCTCATCGATGAAGCTACTCACGCGATACAGCCTCGGCTCAATAGCAATCGGTTCCTTAATTGTGTCTTTTATCGAGTCGACTCGGTTCATACTCGAAGCCATTCGAAGGAGACTCAAAGTCGCTGACATCATGCCCGAAAACTTCATCAAAAGAATGATGTTCCACACTTCTCGTTTTTGCTTAAAGGGCATTGAATTAACCATAAAATCAGTAAACCGAAACGCATACATTATGATTGCAATAACGGGAAAAGGATTCTTCAAAGCTTCAGAAATTGCAACAAATTTGATAATAAGTAACATTTTGCGGATTGGAAGAGTGAATGTGATTGGAGATGTTATTTTATTTCTTGGAAAGCTTTGTGTGAGTCTTGCTAGTGCGCTTTTCGCGTTTCTTATGTTGGACACTCATAAGTACAAATCGTCTCACAACAAGATCACATCCCCGTTATTTCCTGTAATGGTGTGTTGGGGATTAGGGTATGTGGTGGCGACATTGTTTTTTGGGGTGGTGGAAATGTCGATAGATACGATTATTTTATCGTATTGTCAAGATGCAGAGGAACATCAAGGGACAGCACATTATGCGCCTCCACTTTTGATTGAGACTTTTGAGGAAGATAATGAGGTGCAAAGGATTGGACAATGA 2085 41.39 MRGPVIGKYPSSDGNGEVGAGNGIIKHNRKCRDIVFLVFFIAFWISMIVNSSFGFNQGNPLRLNFGLDYKGNVCGGKHSDFDLRELELKYWVNPNQVYQSGMKNSGVKLSNARTICLLDCPIPSEDSLNWVCDYPEGDIRLSLDDWIDMNYDYFADLTPELRNTSLQLQGPCYPVIFPSVNVYWSCQFIDRPSNVSLTNWKRMNGVTINDDMIIDKSIHNSINARSSVLKRYVADVGKSWPVLIVCGGLLPLFLSLLWLLMIRHFVTGMPWVTIFLFNGLIISVTMFYYMKAGWIGNDAISPIIGEHDPYYHVTSREQHHMRAAAFLMTCVMIISVLSSIAIVRRILMATSVAAKVIGEVHALIIFPVIPYLILAVFYMIWVSAALHLFSSGEIVRNDCSTNCCAYDLKAKRVSCDDCCGYSIHYTNHIAASILFHLFGCYWATQFLIASSSTVIAGSVASYYWARGESSTTIPFLPVFSSMKLLTRYSLGSIAIGSLIVSFIESTRFILEAIRRRLKVADIMPENFIKRMMFHTSRFCLKGIELTIKSVNRNAYIMIAITGKGFFKASEIATNLIISNILRIGRVNVIGDVILFLGKLCVSLASALFAFLMLDTHKYKSSHNKITSPLFPVMVCWGLGYVVATLFFGVVEMSIDTIILSYCQDAEEHQGTAHYAPPLLIETFEEDNEVQRIGQ 694
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lssa7g03591 694 PANTHER CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44) 23 685 IPR007603 GO:0022857(InterPro)|GO:0055085(InterPro)
Lssa7g03591 694 Pfam Plasma-membrane choline transporter 327 666 IPR007603 GO:0022857(InterPro)|GO:0055085(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lssa7g03591 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Lssa Lssa-Chr7:27967081 Lssa7g03591 Lssa-Chr7:190282134 dispersed