Gene detail

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Species

Gene ID

Example:

Or, Query Sequence

Example:

Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lssa7g03617	ATGGCGAATTTCTTATCTCAGTTTCAGTCCATCAAAAATTCTTGCGATCGCCTCATCATTGCAATTGACGATGTGAGTGATTTGTGGCCCCTTGTGAAGGAAGGATTTGAGAAACGGCTTCCATTTAAAAGAGCTACATTGAACAACAAAACCCGAAATCCTGTGACTGTAGATAATCTTCCAGCCGAGTTTATCTTAGCATCAGATCAAAGGGTCAGAAGTCGTTTCCTTCCAGAGCAACCATTGTTTTGGTTTAAAGAACCATATGCAACTGTGGTTCTTGTGACCTGTGAGGATCTGGATGAGTTCAAAACAATTCTGAAACCACGTCTGAAATTAACCTTGCAAAATGATGAGAAACAGTGGTTCATTGTGTTTGTGTCTAAAGCTGCACCCAATAATGACCAAGCATACAAGATGGCACAAAAAGTTTATGGAAGACTTGAAGTTGATTTCAACTCAAGAAAAAGGGAAAGGTGCTGCAAATTGGATCTACATGGACCTGAAACAACAACTTTTTGGGAAGATTTACAGCTCAAAATCATGGAGTGCATTAGAAACAGTCTTGATAGGCGTATCCAGTTTTATGAGGATGAGATTCGAAAGCTCAGTGAACAACGTTTTATGCCTATTTGGAGTTTCTGTAATTTTTTCATTCTCAAGGAGAGCCTGGCATTCATGTTTCAAATGGCTCATCTTAATGAGGAATCATTGCGCGAATATGATGAACTAGAGCTCTGTTATTTGGAAACAGTTAACAATGCAGGAAAACAAAGGGAGTTTGGAGGAATAGACCATGGAGATGATCAAGCTGCAATATTAAACCCTAACAACAAACAACTGTCACAAATTGTTGAAGATGATTCCTTTAGGGAGTTTGAATTTCGACAATACCTTTTCTCCTGTCAAGCTAAGCTGTTATTCAAGCTAAAACGTCCATTTGAAGTTGCATCAAGAGGGTTTTCATTCATTGTTAGCTTCTCAGAAGCATTGGCCTTACGTGAGAGTGGTTTGCCCTTCTGTATGAGGGAAGTTTGGGTTTTAACTGCATGCTTGGGGTTGGTCAACGCAACTGCTGACCATTACAAGGATGGAATAGTGGCACCAGAGATAGAAAAAGAATTTTATCGTGTAAAAGGAGAGTTGTATACTCTATGTCGTGTTAAGTTCATGAGGCTTGCATATTTACTTGGGTATGGATCTGATATAGAAAGAAGTCCAGTCAACAGTGCTTCACTTAGCATGTTGCCATGGCCTAAGCCAGCAGTTTGGCCTTCAGTTCCCTCTGATGCTGCATCCGAGGTTCTTGTGAAAGAAAAAATGATGCAAGAAGCTACTCCAAGGATCAAACATTTTGGTATTCAGAAGAAACCATTGCCTCTTGAACCCTCTTTTCTTCTACATGAAGCTAATCGCCAAAAAAGCTCTCGTTCTACAGGTAATATGGATGATGATTCAAACATTACTTTTTCATTCATTGTTATCCGTTTTGTTAACATATTACATGATGCCAGCTCAGATTCCGAAGCACAATCATCTCAACAAAGGAAACTCGCTGAAGTTTTTGTGGCTTCTCAACATGCTCTACGTAAAACTATCTCCGATCCTGGTTTATGGAAGTCGTTGTCATCTTTACAAGAGTTTGAGAAAAAGTATCTGGAGCTATCAAAGGGGGCTGCTGATAACTACCATCATTCATGGTGGAAAAGGCACGGAGTTGTCCTCGACGGCGAAATCGCCTCCGTCTGCTTCAAAAACGGCAACCACGATCTAGCTGCGAAATCATACGAGAAGGTTTGCGCGCTGTACTCCGGCGAAGGGTGGCATGATTTGTTAGCCGACGTACTCCCAAACTTAGCCGAATGCCAGAAAATCCTCAACGATCGAGCCGGATACCTTTCGTCATGTGTGCGATTGCTTTCACTCGATAAAGGCTTGTTCTTAACAAACGAACGTCAAGCGTTTCAATCAGAAGTCGTTCGTCTTGCTCATAGCGAAATGGAGGATCCTGTTCCGTTAGATGTGTCGTCGTTGATAACATTTTCCGGCAACTCAGGGCCGCCGATGGAGCTTTGCGACGGAGATCCGGGTTCGTTATCTGTAACTTTATGGTGTGATTTTCCAGATGATATCACTCTTGAATCACTTAGTCTCACCTTAACTGCCACCAATAACGCCGACGAATGCGTCAAGGCAATTAGAAGCGGTGATGTAACGATACTGAAGCCTGGGAGAAACACAATCACGCTTTCTTTACCCCCACAGAAACCCGGTTCGTATGTGTTGGGTGTTCTCACGGGGCAAATTGGTCATTTACGCTTTAGGTCTCATGGTTTCTCGAGAGGTGGGCCCGCTGATAGTGATGACCTCATGAGTTACGATAAACCCACTCGACCCATTCTGAAGGTGTTTAAACCAAGATCACTTGTTGATCTTTCTGCAAAAGTTTCATCTGCGTTATTAATGAATGAAGCTCAGTGGGTTGGAATAATTGTAAAGCCATTTAAATACTCCTTAAAAGGAGCTGTTTTGCATATCAACACTGGGCCTGGATTGAAGATTGAGGAGTCACATGACATAGAAATGGAGACACATTTTACTTCAGATGATGATAATAATAATAATAATAATATTAACAATAATAATAATGATGATGATTCTGTTGTTCCAAAAGAATTTTCTAAACTTACTCTTAAAAATGGTAGAATAGAGTTACCAGATTGGGCAAGCAATATTGTTGGTGTTTTGTGGATACCTGTGCGTGCCATAAATGAAGGACTACCAAAAGGAACATCTGCAGGGGTAGTATTGTCCCAAAGAGCAAATGTAGTCGATGGACTGAGGACATTAGCTCTAAAACTTGAATTTGGAGTGTCAAGAAATCAGATATTTGAAAAGACAGTAGCTGTTCATTTCACTGACCCATTCCACGTCAGCACACGTGTGGCAGACAAGGGCAATGATGGCGCTTTGCTTTTGCAGGTGATATTACAGTCACAAGTCAAAGCCTCGTTGACTATTCATGATGCATGGTTAGATCTACAAGATGGTTCTGTTCATGATGGAAAACCAACATCTGCATTGTTTCCTCTCATTGTTCCTCCAGCCTCTAGAGCTGGAATTTTATTTGATGAAAAGAAAGCATTGCATCCTGACACAATATTAAATATTAAATACAAAATATCGGGAGACAGAAATCATGGGTCTCACACTCCCGTATCCTTGGAAACAAAAGCACATGACAATGATGTATTGACATTCAGGAGTTCTCTTGAGTTACAACGACCTGTTCTAGAACCTTCTTTAGCAGTTGGTTTTCTTCCTCTTCCTTCAAATGGTCTTAGAGTCGGCCAGCTTTTCACCATGAAATGGAGAATCGAAAGATTAAAGTTTTTTAAAGATGAAACAGCTTCTGGTAACAACGACGAAGTAGTGTATGAAGTGAAGGCGAATTTAAAGAATTGGATGATTGCCGGAAGGAAGCGAGGCCATGCTCCCCTCTCCACAAAGCAAGGTTCAAGGATCGAGATTTCTATATTGTGTGTACCGCTAGGTGCTGGATATGTTCGGCCTCCACAACTGGAATTGCCAAATGTGAATCGGGCAAATATAATATGCAATCCTGCGGGACCACATTTGGTGTGTGTCCTACCTCCGCCTTTGAGCTCATCATTTTGCATTCCAGCGTGA	3690	41.36	MANFLSQFQSIKNSCDRLIIAIDDVSDLWPLVKEGFEKRLPFKRATLNNKTRNPVTVDNLPAEFILASDQRVRSRFLPEQPLFWFKEPYATVVLVTCEDLDEFKTILKPRLKLTLQNDEKQWFIVFVSKAAPNNDQAYKMAQKVYGRLEVDFNSRKRERCCKLDLHGPETTTFWEDLQLKIMECIRNSLDRRIQFYEDEIRKLSEQRFMPIWSFCNFFILKESLAFMFQMAHLNEESLREYDELELCYLETVNNAGKQREFGGIDHGDDQAAILNPNNKQLSQIVEDDSFREFEFRQYLFSCQAKLLFKLKRPFEVASRGFSFIVSFSEALALRESGLPFCMREVWVLTACLGLVNATADHYKDGIVAPEIEKEFYRVKGELYTLCRVKFMRLAYLLGYGSDIERSPVNSASLSMLPWPKPAVWPSVPSDAASEVLVKEKMMQEATPRIKHFGIQKKPLPLEPSFLLHEANRQKSSRSTGNMDDDSNITFSFIVIRFVNILHDASSDSEAQSSQQRKLAEVFVASQHALRKTISDPGLWKSLSSLQEFEKKYLELSKGAADNYHHSWWKRHGVVLDGEIASVCFKNGNHDLAAKSYEKVCALYSGEGWHDLLADVLPNLAECQKILNDRAGYLSSCVRLLSLDKGLFLTNERQAFQSEVVRLAHSEMEDPVPLDVSSLITFSGNSGPPMELCDGDPGSLSVTLWCDFPDDITLESLSLTLTATNNADECVKAIRSGDVTILKPGRNTITLSLPPQKPGSYVLGVLTGQIGHLRFRSHGFSRGGPADSDDLMSYDKPTRPILKVFKPRSLVDLSAKVSSALLMNEAQWVGIIVKPFKYSLKGAVLHINTGPGLKIEESHDIEMETHFTSDDDNNNNNNINNNNNDDDSVVPKEFSKLTLKNGRIELPDWASNIVGVLWIPVRAINEGLPKGTSAGVVLSQRANVVDGLRTLALKLEFGVSRNQIFEKTVAVHFTDPFHVSTRVADKGNDGALLLQVILQSQVKASLTIHDAWLDLQDGSVHDGKPTSALFPLIVPPASRAGILFDEKKALHPDTILNIKYKISGDRNHGSHTPVSLETKAHDNDVLTFRSSLELQRPVLEPSLAVGFLPLPSNGLRVGQLFTMKWRIERLKFFKDETASGNNDEVVYEVKANLKNWMIAGRKRGHAPLSTKQGSRIEISILCVPLGAGYVRPPQLELPNVNRANIICNPAGPHLVCVLPPPLSSSFCIPA	1229

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lssa7g03617	1229	Pfam	Trafficking protein particle complex subunit 10, TRAPPC10	1112	1197	IPR022233	-
	Lssa7g03617	1229	Coils	Coil	179	206	-	-
	Lssa7g03617	1229	MobiDBLite	consensus disorder prediction	869	887	-	-
	Lssa7g03617	1229	PANTHER	EPILEPSY HOLOPROSENCEPHALY CANDIDATE 1-TMEM1	9	1228	IPR045126	GO:0006891(PANTHER)\|GO:0034498(PANTHER)\|GO:0048193(InterPro)\|GO:1990071(InterPro)\|GO:1990071(PANTHER)
	Lssa7g03617	1229	MobiDBLite	consensus disorder prediction	866	887	-	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lssa7g03617	K20307	trafficking protein particle complex subunit 10

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Lssa	Lssa-Chr6:78321272	Lssa7g03617	Lssa-Chr7:191816676	dispersed
	Lssa	Lssa-Chr7:191816676	Lssa8g00653	Lssa-Chr8:22680427	dispersed
	Lssa	Lssa-Chr4:353425074	Lssa7g03617	Lssa-Chr7:191816676	transposed
	Lssa	Lssa-Chr8:277761208	Lssa7g03617	Lssa-Chr7:191816676	transposed
	Lssa	Lssa-Chr7:191816676	Lssa9g03523	Lssa-Chr9:172768701	wgd